miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 5' -63.2 NC_003521.1 + 150662 0.67 0.640858
Target:  5'- aAGGCGGcuCUCCGGCGGcggcgccgcugcuGCUggGUGCu -3'
miRNA:   3'- -UCCGCCc-GGGGCCGCU-------------CGAuaCACGc -5'
14066 5' -63.2 NC_003521.1 + 111036 0.67 0.632299
Target:  5'- cGGUcGGCCUCGGCGcGCac-GUGCGc -3'
miRNA:   3'- uCCGcCCGGGGCCGCuCGauaCACGC- -5'
14066 5' -63.2 NC_003521.1 + 46592 0.67 0.632299
Target:  5'- cAGGCGGGaCCUGGCG-GCUuucUGU-CGg -3'
miRNA:   3'- -UCCGCCCgGGGCCGCuCGAu--ACAcGC- -5'
14066 5' -63.2 NC_003521.1 + 101272 0.67 0.62279
Target:  5'- gAGGCuGGCCCagaGcGCGuAGCUGUgcucgGUGCGc -3'
miRNA:   3'- -UCCGcCCGGGg--C-CGC-UCGAUA-----CACGC- -5'
14066 5' -63.2 NC_003521.1 + 169275 0.67 0.62279
Target:  5'- aAGGCGGcGUCgucuucggCGGCGGGCUcgGUGaCGu -3'
miRNA:   3'- -UCCGCC-CGGg-------GCCGCUCGAuaCAC-GC- -5'
14066 5' -63.2 NC_003521.1 + 120938 0.67 0.62279
Target:  5'- cGGCGgcGGCUCCGGCGAGggGcagGggGCGg -3'
miRNA:   3'- uCCGC--CCGGGGCCGCUCgaUa--Ca-CGC- -5'
14066 5' -63.2 NC_003521.1 + 171660 0.67 0.62279
Target:  5'- cGGCGGGCgUCGG-GAGCgucg-GCGg -3'
miRNA:   3'- uCCGCCCGgGGCCgCUCGauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 168549 0.67 0.613286
Target:  5'- cGGCGgcGGCgCUGGCGGGCUgcggguaagGUG-GCGg -3'
miRNA:   3'- uCCGC--CCGgGGCCGCUCGA---------UACaCGC- -5'
14066 5' -63.2 NC_003521.1 + 98472 0.68 0.603795
Target:  5'- cGGCGgcGGCCgCGGCG-GCcGUGgcgGCGg -3'
miRNA:   3'- uCCGC--CCGGgGCCGCuCGaUACa--CGC- -5'
14066 5' -63.2 NC_003521.1 + 197489 0.68 0.603795
Target:  5'- cGGCGGGCCggaCGGCGcggAGCaGUGUuCGu -3'
miRNA:   3'- uCCGCCCGGg--GCCGC---UCGaUACAcGC- -5'
14066 5' -63.2 NC_003521.1 + 98882 0.68 0.600951
Target:  5'- cAGGUGGGCgCCCacGCGcugcacggucaggcGGCUGUaGUGCGu -3'
miRNA:   3'- -UCCGCCCG-GGGc-CGC--------------UCGAUA-CACGC- -5'
14066 5' -63.2 NC_003521.1 + 77749 0.68 0.594322
Target:  5'- cGGGCcGGCCUCGGCGuGGCUcuucacGUaGUGCc -3'
miRNA:   3'- -UCCGcCCGGGGCCGC-UCGA------UA-CACGc -5'
14066 5' -63.2 NC_003521.1 + 40308 0.68 0.575452
Target:  5'- uGGCGuugaGCCCCuuGGCcAGCUcgGUGCGc -3'
miRNA:   3'- uCCGCc---CGGGG--CCGcUCGAuaCACGC- -5'
14066 5' -63.2 NC_003521.1 + 168816 0.68 0.55579
Target:  5'- cGGCgcauccugaagcuGGGCCCCaGCGAGCUGc--GCGu -3'
miRNA:   3'- uCCG-------------CCCGGGGcCGCUCGAUacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 17 0.68 0.547422
Target:  5'- -uGCGGGUCCCGGgGGGUggggggGUGUuuuugGCGg -3'
miRNA:   3'- ucCGCCCGGGGCCgCUCGa-----UACA-----CGC- -5'
14066 5' -63.2 NC_003521.1 + 240566 0.68 0.547422
Target:  5'- -uGCGGGUCCCGGgGGGUggggggGUGUuuuugGCGg -3'
miRNA:   3'- ucCGCCCGGGGCCgCUCGa-----UACA-----CGC- -5'
14066 5' -63.2 NC_003521.1 + 40339 0.68 0.547422
Target:  5'- -uGCGGGUCCCGGgGGGUggggggGUGUuuuugGCGg -3'
miRNA:   3'- ucCGCCCGGGGCCgCUCGa-----UACA-----CGC- -5'
14066 5' -63.2 NC_003521.1 + 648 0.69 0.538172
Target:  5'- aAGGaCGGGCCCCGGgGGGac----GCGg -3'
miRNA:   3'- -UCC-GCCCGGGGCCgCUCgauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 40969 0.69 0.538172
Target:  5'- aAGGaCGGGCCCCGGgGGGac----GCGg -3'
miRNA:   3'- -UCC-GCCCGGGGCCgCUCgauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 197855 0.69 0.535407
Target:  5'- cGGUGGGCgCCGGCGggucgcgcucgcugGGCUGcagGCGg -3'
miRNA:   3'- uCCGCCCGgGGCCGC--------------UCGAUacaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.