miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14067 3' -55.9 NC_003521.1 + 174691 0.66 0.951453
Target:  5'- uGCGAggggUCCCCGCUGaUCUgUUUCACg -3'
miRNA:   3'- -UGCUaguaAGGGGCGGC-AGA-GAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 138105 0.66 0.951453
Target:  5'- cACG-UC-UUCUgCGCCGUCUuCUCCGa -3'
miRNA:   3'- -UGCuAGuAAGGgGCGGCAGA-GAGGUg -5'
14067 3' -55.9 NC_003521.1 + 134882 0.67 0.947381
Target:  5'- cACGGUCAUcaUCCgCGCCGg----CCACa -3'
miRNA:   3'- -UGCUAGUA--AGGgGCGGCagagaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 24523 0.67 0.947381
Target:  5'- cCGA-CAUcacCCCCGCCaacGUCguccgCUCCACg -3'
miRNA:   3'- uGCUaGUAa--GGGGCGG---CAGa----GAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 94156 0.67 0.947381
Target:  5'- uGCGGUCGgcUUCgUUGCCGUC-CUCCuCg -3'
miRNA:   3'- -UGCUAGU--AAGgGGCGGCAGaGAGGuG- -5'
14067 3' -55.9 NC_003521.1 + 191574 0.67 0.947381
Target:  5'- cACG-UCAUUUcacaCCCGCCccUUUCUCCACu -3'
miRNA:   3'- -UGCuAGUAAG----GGGCGGc-AGAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 220657 0.67 0.928876
Target:  5'- cGCGGaCcgUCgUCGCCGUCgUCUCgGCa -3'
miRNA:   3'- -UGCUaGuaAGgGGCGGCAG-AGAGgUG- -5'
14067 3' -55.9 NC_003521.1 + 72434 0.67 0.928876
Target:  5'- gGCGAg---UCCUCGCCGUCgUCgUCGCg -3'
miRNA:   3'- -UGCUaguaAGGGGCGGCAG-AGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 5990 0.67 0.928876
Target:  5'- cACGcuAUCGccgUCCCCGUCGUCgUCUUCGu -3'
miRNA:   3'- -UGC--UAGUa--AGGGGCGGCAG-AGAGGUg -5'
14067 3' -55.9 NC_003521.1 + 110923 0.68 0.906784
Target:  5'- gGCGcgCGgccgCCCCGUCGUCgucCUCCu- -3'
miRNA:   3'- -UGCuaGUaa--GGGGCGGCAGa--GAGGug -5'
14067 3' -55.9 NC_003521.1 + 154115 0.68 0.906784
Target:  5'- uCGAUCAccgCCUCGUCGUCgccgCCGCg -3'
miRNA:   3'- uGCUAGUaa-GGGGCGGCAGaga-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 222737 0.68 0.900704
Target:  5'- ---cUCcgUCCCCgcgGCCGUCgUCUCCAg -3'
miRNA:   3'- ugcuAGuaAGGGG---CGGCAG-AGAGGUg -5'
14067 3' -55.9 NC_003521.1 + 188304 0.68 0.894405
Target:  5'- gGCGGcUC-UUCUUCGCCGcgCUCUCUACc -3'
miRNA:   3'- -UGCU-AGuAAGGGGCGGCa-GAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 117461 0.69 0.881164
Target:  5'- ----cCAgcCCCCGCCGcCUCcUCCACa -3'
miRNA:   3'- ugcuaGUaaGGGGCGGCaGAG-AGGUG- -5'
14067 3' -55.9 NC_003521.1 + 213092 0.69 0.874229
Target:  5'- gGCGcUCGUUCUCCuCUGUCUUUCUGCc -3'
miRNA:   3'- -UGCuAGUAAGGGGcGGCAGAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 174983 0.69 0.859753
Target:  5'- cAUGAgucacuaaGUUCCacaGCUGUCUCUCCACc -3'
miRNA:   3'- -UGCUag------UAAGGgg-CGGCAGAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 129738 0.69 0.859753
Target:  5'- cGCGAgcgCG-UCCgCGCCGUCUUcgCCGCc -3'
miRNA:   3'- -UGCUa--GUaAGGgGCGGCAGAGa-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 171069 0.69 0.852222
Target:  5'- cCGAUCAUgcacuugugCCaCCGCCGcCUCcCCGCc -3'
miRNA:   3'- uGCUAGUAa--------GG-GGCGGCaGAGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 47299 0.7 0.844503
Target:  5'- -aGGUCcgUCCgauCCGUCGUCUCagCCGCu -3'
miRNA:   3'- ugCUAGuaAGG---GGCGGCAGAGa-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 56693 0.71 0.803322
Target:  5'- cACGAUCAa--CaCGCCGUCUCggCCGCg -3'
miRNA:   3'- -UGCUAGUaagGgGCGGCAGAGa-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.