miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14067 5' -57 NC_003521.1 + 119029 0.67 0.911911
Target:  5'- ---cGGAuucGGAuAGGGCGGGCGGCGUc -3'
miRNA:   3'- gucuCCU---CCUcUCCUGCCUGCUGCAu -5'
14067 5' -57 NC_003521.1 + 223486 0.67 0.911911
Target:  5'- aCGGcccGGGAGGuG-GGGCGGAuCGGCGa- -3'
miRNA:   3'- -GUC---UCCUCCuCuCCUGCCU-GCUGCau -5'
14067 5' -57 NC_003521.1 + 48273 0.67 0.911911
Target:  5'- gAGAGGgagaagacGGGAGAGa--GGACGACGa- -3'
miRNA:   3'- gUCUCC--------UCCUCUCcugCCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 49964 0.67 0.911911
Target:  5'- aAGAGGAGGAcGAGcGGCgGGugGGuCGa- -3'
miRNA:   3'- gUCUCCUCCU-CUC-CUG-CCugCU-GCau -5'
14067 5' -57 NC_003521.1 + 164067 0.67 0.911911
Target:  5'- uGGAGGAGGGGAGaACGGGgucggUGGCa-- -3'
miRNA:   3'- gUCUCCUCCUCUCcUGCCU-----GCUGcau -5'
14067 5' -57 NC_003521.1 + 57123 0.67 0.911911
Target:  5'- -cGAGGGGGAauccGcGGugGGugGAgGUGa -3'
miRNA:   3'- guCUCCUCCU----CuCCugCCugCUgCAU- -5'
14067 5' -57 NC_003521.1 + 40959 0.67 0.906071
Target:  5'- --aAGGAGGAGAaaGGACGGGCcccgggggGACGc- -3'
miRNA:   3'- gucUCCUCCUCU--CCUGCCUG--------CUGCau -5'
14067 5' -57 NC_003521.1 + 116992 0.67 0.906071
Target:  5'- gCGGGGGAagaGGAgGAGGACGaaGACGACc-- -3'
miRNA:   3'- -GUCUCCU---CCU-CUCCUGC--CUGCUGcau -5'
14067 5' -57 NC_003521.1 + 198317 0.67 0.906071
Target:  5'- ---uGGGGGuGGGGGAUGGGCGGCu-- -3'
miRNA:   3'- gucuCCUCC-UCUCCUGCCUGCUGcau -5'
14067 5' -57 NC_003521.1 + 174014 0.67 0.906071
Target:  5'- gGGGGGAgagaugGGAGAGGA--GACGGCGg- -3'
miRNA:   3'- gUCUCCU------CCUCUCCUgcCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 638 0.67 0.906071
Target:  5'- --aAGGAGGAGAaaGGACGGGCcccgggggGACGc- -3'
miRNA:   3'- gucUCCUCCUCU--CCUGCCUG--------CUGCau -5'
14067 5' -57 NC_003521.1 + 98463 0.67 0.900013
Target:  5'- uGGAGGAGGcGGcGGCGGccGCGGCGg- -3'
miRNA:   3'- gUCUCCUCCuCUcCUGCC--UGCUGCau -5'
14067 5' -57 NC_003521.1 + 181670 0.67 0.899395
Target:  5'- gCGGGGGAgaucGGAGAGaGACGGcagcuuuaucggcAUGACGUu -3'
miRNA:   3'- -GUCUCCU----CCUCUC-CUGCC-------------UGCUGCAu -5'
14067 5' -57 NC_003521.1 + 213095 0.67 0.89374
Target:  5'- aUAGAGGAGGAGAc-GCGGcuCGACGc- -3'
miRNA:   3'- -GUCUCCUCCUCUccUGCCu-GCUGCau -5'
14067 5' -57 NC_003521.1 + 89000 0.67 0.89374
Target:  5'- ----cGAGGAGaAGGacGCGGACGugGUGg -3'
miRNA:   3'- gucucCUCCUC-UCC--UGCCUGCugCAU- -5'
14067 5' -57 NC_003521.1 + 61485 0.68 0.887255
Target:  5'- aAGGGGAGGAcgaaaaGAGGGCacccGAaCGACGUGc -3'
miRNA:   3'- gUCUCCUCCU------CUCCUGc---CU-GCUGCAU- -5'
14067 5' -57 NC_003521.1 + 13860 0.68 0.880561
Target:  5'- ---cGGAGGGGAGGAUGGGgGugaACGUu -3'
miRNA:   3'- gucuCCUCCUCUCCUGCCUgC---UGCAu -5'
14067 5' -57 NC_003521.1 + 121842 0.68 0.879198
Target:  5'- uCAGAGGAGGAggagucggacaccGAGGAgGGACugucucgGGCGc- -3'
miRNA:   3'- -GUCUCCUCCU-------------CUCCUgCCUG-------CUGCau -5'
14067 5' -57 NC_003521.1 + 140791 0.68 0.873662
Target:  5'- aGGAGGAGGGGGGGA-GGAUaACu-- -3'
miRNA:   3'- gUCUCCUCCUCUCCUgCCUGcUGcau -5'
14067 5' -57 NC_003521.1 + 197419 0.68 0.873662
Target:  5'- gCAGuAGGaAGGGGAGGgcGCGGGCGAg--- -3'
miRNA:   3'- -GUC-UCC-UCCUCUCC--UGCCUGCUgcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.