miRNA display CGI


Results 21 - 40 of 507 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14068 3' -60.9 NC_003521.1 + 236371 0.66 0.816509
Target:  5'- -cGCAgGCGGUGCCuUCaGAucGCCUCGGg -3'
miRNA:   3'- guCGU-CGUCGCGGcGG-CUu-CGGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 186954 0.66 0.816509
Target:  5'- -cGCAGCAGgcacucguacaCGCCgGCCGAGgacGCCgucgcgCGGa -3'
miRNA:   3'- guCGUCGUC-----------GCGG-CGGCUU---CGGa-----GCC- -5'
14068 3' -60.9 NC_003521.1 + 213723 0.66 0.816509
Target:  5'- cCGGCcuGC-GCGCCGUCGAgAGCCUg-- -3'
miRNA:   3'- -GUCGu-CGuCGCGGCGGCU-UCGGAgcc -5'
14068 3' -60.9 NC_003521.1 + 85661 0.66 0.816509
Target:  5'- ---gAGCAG-GUCGCCGAAGUCgaggUCGGu -3'
miRNA:   3'- gucgUCGUCgCGGCGGCUUCGG----AGCC- -5'
14068 3' -60.9 NC_003521.1 + 58433 0.66 0.816509
Target:  5'- aAGCcGCAGCGCUGCCG-GGCg---- -3'
miRNA:   3'- gUCGuCGUCGCGGCGGCuUCGgagcc -5'
14068 3' -60.9 NC_003521.1 + 91762 0.66 0.816509
Target:  5'- gAGC-GCGGC-CgCGUCGAAGCCcagcgCGGg -3'
miRNA:   3'- gUCGuCGUCGcG-GCGGCUUCGGa----GCC- -5'
14068 3' -60.9 NC_003521.1 + 207294 0.66 0.816509
Target:  5'- uCGGCAcGCAGguuUGCCGCCGAugaaacagggauAGCaggucuUCGGg -3'
miRNA:   3'- -GUCGU-CGUC---GCGGCGGCU------------UCGg-----AGCC- -5'
14068 3' -60.9 NC_003521.1 + 205438 0.66 0.816509
Target:  5'- -cGCGGCccGCGUccuCGCCGAGGgggaCUCGGc -3'
miRNA:   3'- guCGUCGu-CGCG---GCGGCUUCg---GAGCC- -5'
14068 3' -60.9 NC_003521.1 + 129547 0.66 0.816509
Target:  5'- -cGCGGCGGCGCUGgCaCGGcgGGCC-CGa -3'
miRNA:   3'- guCGUCGUCGCGGC-G-GCU--UCGGaGCc -5'
14068 3' -60.9 NC_003521.1 + 198026 0.66 0.816509
Target:  5'- -uGCGGCGcguGCaGCCGCCG-GGCUgcaCGGg -3'
miRNA:   3'- guCGUCGU---CG-CGGCGGCuUCGGa--GCC- -5'
14068 3' -60.9 NC_003521.1 + 220657 0.66 0.816509
Target:  5'- -cGCGGaCcGuCGUCGCCGucGUCUCGGc -3'
miRNA:   3'- guCGUC-GuC-GCGGCGGCuuCGGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 131072 0.66 0.815693
Target:  5'- gCGGUGGCGGCGaCCGCgGcucgcgcGGGCUcCGGa -3'
miRNA:   3'- -GUCGUCGUCGC-GGCGgC-------UUCGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 138884 0.66 0.811589
Target:  5'- aCGGCGGCcacguggaccccaccGGCGaguaCGCCGGcucGGUgUCGGa -3'
miRNA:   3'- -GUCGUCG---------------UCGCg---GCGGCU---UCGgAGCC- -5'
14068 3' -60.9 NC_003521.1 + 27092 0.66 0.811589
Target:  5'- aCGGCcuucuGCGGCGCCGucuggcugggcauccCCGAGGCC-Ca- -3'
miRNA:   3'- -GUCGu----CGUCGCGGC---------------GGCUUCGGaGcc -5'
14068 3' -60.9 NC_003521.1 + 7095 0.66 0.811589
Target:  5'- gCGGCGGCGGCguccuccuucuccagGCCGCUGAGGU---GGa -3'
miRNA:   3'- -GUCGUCGUCG---------------CGGCGGCUUCGgagCC- -5'
14068 3' -60.9 NC_003521.1 + 123177 0.66 0.808281
Target:  5'- uGGCGGCGGCGgCGggggaCCGuAGGCCgcauaCGGc -3'
miRNA:   3'- gUCGUCGUCGCgGC-----GGC-UUCGGa----GCC- -5'
14068 3' -60.9 NC_003521.1 + 197383 0.66 0.808281
Target:  5'- gAGUucCAGgGCCGCCGccGCCUCc- -3'
miRNA:   3'- gUCGucGUCgCGGCGGCuuCGGAGcc -5'
14068 3' -60.9 NC_003521.1 + 127744 0.66 0.808281
Target:  5'- cCGGCGGCcgucuGCGCC-UCGuAGCC-CGGa -3'
miRNA:   3'- -GUCGUCGu----CGCGGcGGCuUCGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 111515 0.66 0.808281
Target:  5'- gCGGCGGCGGCGCaCGCCaucAAGuuccacgaCCUCa- -3'
miRNA:   3'- -GUCGUCGUCGCG-GCGGc--UUC--------GGAGcc -5'
14068 3' -60.9 NC_003521.1 + 205353 0.66 0.808281
Target:  5'- gCGGCAGCuGCGCCGUgcaCGAccuGCg-CGGc -3'
miRNA:   3'- -GUCGUCGuCGCGGCG---GCUu--CGgaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.