miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14068 5' -56 NC_003521.1 + 90046 0.68 0.894622
Target:  5'- gCGCCCGc--CCGUCGUCGcgcgaGCGCa-- -3'
miRNA:   3'- -GCGGGCuuaGGCAGCAGUa----CGCGaca -5'
14068 5' -56 NC_003521.1 + 5227 0.68 0.894622
Target:  5'- cCGCCCGAGUCCGccucUCGUCcuccCGCa-- -3'
miRNA:   3'- -GCGGGCUUAGGC----AGCAGuac-GCGaca -5'
14068 5' -56 NC_003521.1 + 211791 0.69 0.887483
Target:  5'- aGCCCGGaaccguGUCCGUCGUCGuuuuuuuUGCGg--- -3'
miRNA:   3'- gCGGGCU------UAGGCAGCAGU-------ACGCgaca -5'
14068 5' -56 NC_003521.1 + 201636 0.69 0.881453
Target:  5'- -cCCCGA--CCGUCGUCGUcGCGCg-- -3'
miRNA:   3'- gcGGGCUuaGGCAGCAGUA-CGCGaca -5'
14068 5' -56 NC_003521.1 + 204016 0.69 0.881453
Target:  5'- uGCCCGAGUCCGcCGUCcgcgaGCgGCUc- -3'
miRNA:   3'- gCGGGCUUAGGCaGCAGua---CG-CGAca -5'
14068 5' -56 NC_003521.1 + 150416 0.69 0.867458
Target:  5'- aGCCCGGAcCCGUCuGUCGcGUGCa-- -3'
miRNA:   3'- gCGGGCUUaGGCAG-CAGUaCGCGaca -5'
14068 5' -56 NC_003521.1 + 30154 0.69 0.867458
Target:  5'- uGCCUGuGUCUGggCGUCAcGCGUUGUc -3'
miRNA:   3'- gCGGGCuUAGGCa-GCAGUaCGCGACA- -5'
14068 5' -56 NC_003521.1 + 205035 0.71 0.777683
Target:  5'- aCGCCCGAuggAUCCGuuUCGUCcgucUGCGCa-- -3'
miRNA:   3'- -GCGGGCU---UAGGC--AGCAGu---ACGCGaca -5'
14068 5' -56 NC_003521.1 + 77706 0.71 0.759483
Target:  5'- uGCCCGAGgaggcggCgGUgGUCGUGgCGCUGg -3'
miRNA:   3'- gCGGGCUUa------GgCAgCAGUAC-GCGACa -5'
14068 5' -56 NC_003521.1 + 102313 0.72 0.740862
Target:  5'- gCGUCCGcggcaUCGUCGUCGUGCGCgUGg -3'
miRNA:   3'- -GCGGGCuua--GGCAGCAGUACGCG-ACa -5'
14068 5' -56 NC_003521.1 + 54119 0.72 0.721888
Target:  5'- aGaCCGGAgCCGUCGUCGUGCauGCUGc -3'
miRNA:   3'- gCgGGCUUaGGCAGCAGUACG--CGACa -5'
14068 5' -56 NC_003521.1 + 164075 0.72 0.712288
Target:  5'- uCGCCuCGGAggUCGUCGUCAUGC-CUGc -3'
miRNA:   3'- -GCGG-GCUUa-GGCAGCAGUACGcGACa -5'
14068 5' -56 NC_003521.1 + 22649 0.73 0.683141
Target:  5'- aCGCCUGggU-CGUCGUCAccuacuaccUGCuGCUGUa -3'
miRNA:   3'- -GCGGGCuuAgGCAGCAGU---------ACG-CGACA- -5'
14068 5' -56 NC_003521.1 + 137954 0.74 0.600302
Target:  5'- aGCCCGAGcgcgugugguaugCCGaCGUgGUGCGCUGUg -3'
miRNA:   3'- gCGGGCUUa------------GGCaGCAgUACGCGACA- -5'
14068 5' -56 NC_003521.1 + 47303 0.76 0.507621
Target:  5'- cCGUCCG-AUCCGUCGUCucaGCcGCUGUg -3'
miRNA:   3'- -GCGGGCuUAGGCAGCAGua-CG-CGACA- -5'
14068 5' -56 NC_003521.1 + 142465 1.07 0.007128
Target:  5'- uCGCCCGAAUCCGUCGUCAUGCGCUGUc -3'
miRNA:   3'- -GCGGGCUUAGGCAGCAGUACGCGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.