miRNA display CGI


Results 41 - 60 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 98473 0.67 0.705946
Target:  5'- gGCGGCGGCCGCggcggCCGUGGCGGcGg- -3'
miRNA:   3'- aUGCUGCUGGUGgg---GGCGCCGUC-Cau -5'
14070 5' -62 NC_003521.1 + 118157 0.67 0.705946
Target:  5'- gGCGACG-CCACCCcaCCGCcGCAGa-- -3'
miRNA:   3'- aUGCUGCuGGUGGG--GGCGcCGUCcau -5'
14070 5' -62 NC_003521.1 + 111171 0.67 0.705946
Target:  5'- aGCG-CGGCCGCCCCgGCgacGGCGccgcggacGGUGg -3'
miRNA:   3'- aUGCuGCUGGUGGGGgCG---CCGU--------CCAU- -5'
14070 5' -62 NC_003521.1 + 37295 0.67 0.705946
Target:  5'- cUACGACauccacuucaACCACCagCCGCGGCAgacGGUAg -3'
miRNA:   3'- -AUGCUGc---------UGGUGGg-GGCGCCGU---CCAU- -5'
14070 5' -62 NC_003521.1 + 17509 0.67 0.705946
Target:  5'- cACGGCGGuucCCGgCCCgGCGGCGcGGg- -3'
miRNA:   3'- aUGCUGCU---GGUgGGGgCGCCGU-CCau -5'
14070 5' -62 NC_003521.1 + 157057 0.67 0.705004
Target:  5'- cGCGGCGgggggcgccGCCAcccugucccaggcCCCCCGCGGUgAGGa- -3'
miRNA:   3'- aUGCUGC---------UGGU-------------GGGGGCGCCG-UCCau -5'
14070 5' -62 NC_003521.1 + 113552 0.67 0.700288
Target:  5'- cGgGACGACCACCagcgcgaggaggaCGCGGUGGGg- -3'
miRNA:   3'- aUgCUGCUGGUGGgg-----------GCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 150255 0.67 0.696506
Target:  5'- cACGuCGGCCugCaCCGCGGCcggccucucguGGGUGc -3'
miRNA:   3'- aUGCuGCUGGugGgGGCGCCG-----------UCCAU- -5'
14070 5' -62 NC_003521.1 + 23212 0.67 0.696506
Target:  5'- gAUGGCGGCCgagacGCCCCUGCuGGUccGGGg- -3'
miRNA:   3'- aUGCUGCUGG-----UGGGGGCG-CCG--UCCau -5'
14070 5' -62 NC_003521.1 + 43642 0.67 0.696506
Target:  5'- gGCGGCGGCCGCCgCCGgaGaGCAGa-- -3'
miRNA:   3'- aUGCUGCUGGUGGgGGCg-C-CGUCcau -5'
14070 5' -62 NC_003521.1 + 112053 0.67 0.696506
Target:  5'- cUGCGACG-CCugCUggaggacgCCGCGGUGGGg- -3'
miRNA:   3'- -AUGCUGCuGGugGG--------GGCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 158632 0.67 0.696506
Target:  5'- cACGgaguACGuGCCACCCCCcauGUGGgAGGUGc -3'
miRNA:   3'- aUGC----UGC-UGGUGGGGG---CGCCgUCCAU- -5'
14070 5' -62 NC_003521.1 + 85091 0.67 0.69556
Target:  5'- gUACGGCGAaacuCCCCCaucggcggcggcaGCGGCGGGc- -3'
miRNA:   3'- -AUGCUGCUggu-GGGGG-------------CGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 113861 0.67 0.693665
Target:  5'- gGCGACGACgGCgcgggUUCCGCGGCggcacagcgacagcAGGUAg -3'
miRNA:   3'- aUGCUGCUGgUG-----GGGGCGCCG--------------UCCAU- -5'
14070 5' -62 NC_003521.1 + 53234 0.67 0.687019
Target:  5'- gGCGaaGCGACCgccggcgaaGCCCCCGCGGacuuGGc- -3'
miRNA:   3'- aUGC--UGCUGG---------UGGGGGCGCCgu--CCau -5'
14070 5' -62 NC_003521.1 + 76076 0.67 0.687019
Target:  5'- -cCGGCGACCGCgaugccccccUCCCGCGcuGguGGUAg -3'
miRNA:   3'- auGCUGCUGGUG----------GGGGCGC--CguCCAU- -5'
14070 5' -62 NC_003521.1 + 118212 0.67 0.687019
Target:  5'- aGCGcGCGGCCGCCgCCGUcgccgGGguGGUc -3'
miRNA:   3'- aUGC-UGCUGGUGGgGGCG-----CCguCCAu -5'
14070 5' -62 NC_003521.1 + 74698 0.67 0.677491
Target:  5'- aGCGACGGCgGCg-CCGCGGCAGcGg- -3'
miRNA:   3'- aUGCUGCUGgUGggGGCGCCGUC-Cau -5'
14070 5' -62 NC_003521.1 + 135855 0.67 0.677491
Target:  5'- gACGucucGCGG-CGCCCCCGCGGCAc--- -3'
miRNA:   3'- aUGC----UGCUgGUGGGGGCGCCGUccau -5'
14070 5' -62 NC_003521.1 + 202753 0.67 0.66793
Target:  5'- aGCGACGGCCaccacaACCCCUGUacaGGCGcGUAa -3'
miRNA:   3'- aUGCUGCUGG------UGGGGGCG---CCGUcCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.