miRNA display CGI


Results 21 - 40 of 298 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14071 5' -55.2 NC_003521.1 + 125992 0.66 0.970691
Target:  5'- -cAGCAUGAGCa-CGGU-GCGcGUGCCc -3'
miRNA:   3'- gaUCGUGCUCGccGCCAuCGU-CAUGG- -5'
14071 5' -55.2 NC_003521.1 + 204892 0.66 0.970691
Target:  5'- uUGGC-CGcGCGGCGGgacGGUGGccGCCg -3'
miRNA:   3'- gAUCGuGCuCGCCGCCa--UCGUCa-UGG- -5'
14071 5' -55.2 NC_003521.1 + 109750 0.66 0.970691
Target:  5'- --cGCGCGAGCcGCGGUcGCc--GCCa -3'
miRNA:   3'- gauCGUGCUCGcCGCCAuCGucaUGG- -5'
14071 5' -55.2 NC_003521.1 + 127812 0.66 0.970691
Target:  5'- -cAGCACGuGcCGGUcgaaggugcccgGGUGGUAGUGgCg -3'
miRNA:   3'- gaUCGUGCuC-GCCG------------CCAUCGUCAUgG- -5'
14071 5' -55.2 NC_003521.1 + 19179 0.66 0.970691
Target:  5'- cCUGGCuacaccGCGGGCGGCG--AGCuaagGCCa -3'
miRNA:   3'- -GAUCG------UGCUCGCCGCcaUCGuca-UGG- -5'
14071 5' -55.2 NC_003521.1 + 5303 0.66 0.970691
Target:  5'- -cGGCAUGuuucGCGGgGGcGGC-GUGCCc -3'
miRNA:   3'- gaUCGUGCu---CGCCgCCaUCGuCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 58408 0.66 0.970691
Target:  5'- -cGGcCGCGugauGCGGCGGUugacgaagccgcAGCGcUGCCg -3'
miRNA:   3'- gaUC-GUGCu---CGCCGCCA------------UCGUcAUGG- -5'
14071 5' -55.2 NC_003521.1 + 111949 0.66 0.970691
Target:  5'- cCUGGCGCG-GCGGCaGGaugAGUcuGUugCg -3'
miRNA:   3'- -GAUCGUGCuCGCCG-CCa--UCGu-CAugG- -5'
14071 5' -55.2 NC_003521.1 + 57185 0.66 0.970691
Target:  5'- -cAGCACGaAGCGGCGcaGGgAGUcAUCg -3'
miRNA:   3'- gaUCGUGC-UCGCCGCcaUCgUCA-UGG- -5'
14071 5' -55.2 NC_003521.1 + 239549 0.66 0.970691
Target:  5'- -cGGCgucGCGGGCGGCuagGGUcAGCGuGUugCg -3'
miRNA:   3'- gaUCG---UGCUCGCCG---CCA-UCGU-CAugG- -5'
14071 5' -55.2 NC_003521.1 + 163160 0.66 0.970691
Target:  5'- -----cUGAGCGGUGGUGGCAGc--- -3'
miRNA:   3'- gaucguGCUCGCCGCCAUCGUCaugg -5'
14071 5' -55.2 NC_003521.1 + 75669 0.66 0.970691
Target:  5'- ---cCACG-GUGGUGGcgaGGUAGUGCCg -3'
miRNA:   3'- gaucGUGCuCGCCGCCa--UCGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 120778 0.66 0.970691
Target:  5'- -gGGCACuGcGCGGUGGgcgAGCGcgACCa -3'
miRNA:   3'- gaUCGUG-CuCGCCGCCa--UCGUcaUGG- -5'
14071 5' -55.2 NC_003521.1 + 25786 0.66 0.96984
Target:  5'- cCUGGCccugucgcacuuucACGAGaCGGCucUGGCGGUGCg -3'
miRNA:   3'- -GAUCG--------------UGCUC-GCCGccAUCGUCAUGg -5'
14071 5' -55.2 NC_003521.1 + 203710 0.66 0.96984
Target:  5'- --uGCGCGccGUGaucuuguccgacacGCGGUGGCAGUACg -3'
miRNA:   3'- gauCGUGCu-CGC--------------CGCCAUCGUCAUGg -5'
14071 5' -55.2 NC_003521.1 + 50274 0.66 0.967786
Target:  5'- -gAGUACGAGCGGCGcuucaCGGacaUGCCg -3'
miRNA:   3'- gaUCGUGCUCGCCGCcauc-GUC---AUGG- -5'
14071 5' -55.2 NC_003521.1 + 145864 0.66 0.967786
Target:  5'- -gGGCcCG-GCGGCGG--GCGGcGCCg -3'
miRNA:   3'- gaUCGuGCuCGCCGCCauCGUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 162213 0.66 0.967786
Target:  5'- --uGCuACGAGacgGGgGGUGGUAGcGCCg -3'
miRNA:   3'- gauCG-UGCUCg--CCgCCAUCGUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 115821 0.66 0.967786
Target:  5'- -aGGCGCGGGUGGCuc-AGCAGgcGCUg -3'
miRNA:   3'- gaUCGUGCUCGCCGccaUCGUCa-UGG- -5'
14071 5' -55.2 NC_003521.1 + 57154 0.66 0.967786
Target:  5'- -cGGcCACGcGCGGCaGGUcgucGGC-GUGCCg -3'
miRNA:   3'- gaUC-GUGCuCGCCG-CCA----UCGuCAUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.