miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14073 5' -54.9 NC_003521.1 + 181862 0.66 0.980335
Target:  5'- uUCGCCAcgcacgaccccUCggcgagcUCGCCGAUGACguucgugguaUACCAGg -3'
miRNA:   3'- -AGUGGU-----------AGa------AGCGGCUGCUG----------GUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 129707 0.66 0.980335
Target:  5'- aCGCCcgCUUCuGCCGGCcGCgGCCc- -3'
miRNA:   3'- aGUGGuaGAAG-CGGCUGcUGgUGGuc -5'
14073 5' -54.9 NC_003521.1 + 98039 0.66 0.980335
Target:  5'- gUCACCA---UCGCUuacaGACGACUACUAc -3'
miRNA:   3'- -AGUGGUagaAGCGG----CUGCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 58040 0.66 0.980335
Target:  5'- gCGCgCGUgUUgcUGCUGGCGGCCACCc- -3'
miRNA:   3'- aGUG-GUAgAA--GCGGCUGCUGGUGGuc -5'
14073 5' -54.9 NC_003521.1 + 127555 0.66 0.980335
Target:  5'- aCGCCGUCggccaggUGCuCGGCGAucagcgUCACCAGc -3'
miRNA:   3'- aGUGGUAGaa-----GCG-GCUGCU------GGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 220860 0.66 0.980335
Target:  5'- gUCACgAUCacCGCCagccCGGCCACCAu -3'
miRNA:   3'- -AGUGgUAGaaGCGGcu--GCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 45339 0.66 0.980126
Target:  5'- -gACC-UCUUCGCCGACGuggaacgGCgACCc- -3'
miRNA:   3'- agUGGuAGAAGCGGCUGC-------UGgUGGuc -5'
14073 5' -54.9 NC_003521.1 + 35933 0.66 0.978163
Target:  5'- cCACCGUCc-CGCCGcGCGGCCAaUCGc -3'
miRNA:   3'- aGUGGUAGaaGCGGC-UGCUGGU-GGUc -5'
14073 5' -54.9 NC_003521.1 + 217564 0.66 0.978163
Target:  5'- gUCGCCGUCaUgGCgGA-GAUCAUCAGg -3'
miRNA:   3'- -AGUGGUAGaAgCGgCUgCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 8004 0.66 0.978163
Target:  5'- gUACCGgggCagCGCCGuagcuccaGACCGCCGGa -3'
miRNA:   3'- aGUGGUa--GaaGCGGCug------CUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 138303 0.66 0.978163
Target:  5'- --cCCGUCUUCaacuucgugGCCGACaugGACCugCGGc -3'
miRNA:   3'- aguGGUAGAAG---------CGGCUG---CUGGugGUC- -5'
14073 5' -54.9 NC_003521.1 + 63015 0.66 0.978163
Target:  5'- -aGCCggCggCGCCcacGACGcCCACCAGc -3'
miRNA:   3'- agUGGuaGaaGCGG---CUGCuGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 187649 0.66 0.978163
Target:  5'- -gGCCAUCUucaUCGgCGAgGGCgGCCGc -3'
miRNA:   3'- agUGGUAGA---AGCgGCUgCUGgUGGUc -5'
14073 5' -54.9 NC_003521.1 + 112680 0.66 0.978163
Target:  5'- cCugCAggcCUUCGCCGAgcgcgGGCCGCCc- -3'
miRNA:   3'- aGugGUa--GAAGCGGCUg----CUGGUGGuc -5'
14073 5' -54.9 NC_003521.1 + 75200 0.66 0.978163
Target:  5'- aCACCGUgUUCaCCGugGugCACgGa -3'
miRNA:   3'- aGUGGUAgAAGcGGCugCugGUGgUc -5'
14073 5' -54.9 NC_003521.1 + 123743 0.66 0.978163
Target:  5'- cCGCUuuaaUUCGCaCGGCguGACCGCCGGc -3'
miRNA:   3'- aGUGGuag-AAGCG-GCUG--CUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 26258 0.66 0.978163
Target:  5'- aCGCCAg---CGCUGcUGcACCACCAGg -3'
miRNA:   3'- aGUGGUagaaGCGGCuGC-UGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 162721 0.66 0.978163
Target:  5'- gCACCAgagCgucaaccacUCGuUCGACGugCGCCAGu -3'
miRNA:   3'- aGUGGUa--Ga--------AGC-GGCUGCugGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 102822 0.66 0.978163
Target:  5'- gCACC-UCgaCGCCGAgauCGACCugCGc -3'
miRNA:   3'- aGUGGuAGaaGCGGCU---GCUGGugGUc -5'
14073 5' -54.9 NC_003521.1 + 3658 0.66 0.978163
Target:  5'- cCGCCGUCU--GCCu-CGGCgGCCGGg -3'
miRNA:   3'- aGUGGUAGAagCGGcuGCUGgUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.