miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14074 3' -57.1 NC_003521.1 + 120545 0.66 0.93623
Target:  5'- uCGGCGGCCggcGGuCCcgGGGgaGCGcCCg -3'
miRNA:   3'- -GUCGUUGGa--CCuGGa-CCCgaCGUaGG- -5'
14074 3' -57.1 NC_003521.1 + 124746 0.66 0.935754
Target:  5'- aCAGCGcugcacucgcugcGCCUGGAagagcucaagauCCUGcGGCU-CAUCUg -3'
miRNA:   3'- -GUCGU-------------UGGACCU------------GGAC-CCGAcGUAGG- -5'
14074 3' -57.1 NC_003521.1 + 184158 0.66 0.93137
Target:  5'- -uGCGACCUGGugCgcgagcGGGaggUGCA-CCg -3'
miRNA:   3'- guCGUUGGACCugGa-----CCCg--ACGUaGG- -5'
14074 3' -57.1 NC_003521.1 + 118920 0.66 0.93137
Target:  5'- uCGGC-GCC-GcGGCgUGGGCggcgGCGUCCc -3'
miRNA:   3'- -GUCGuUGGaC-CUGgACCCGa---CGUAGG- -5'
14074 3' -57.1 NC_003521.1 + 26274 0.66 0.93137
Target:  5'- uCAGCugcACCccGGugCUGGuGCUggGCAUCUu -3'
miRNA:   3'- -GUCGu--UGGa-CCugGACC-CGA--CGUAGG- -5'
14074 3' -57.1 NC_003521.1 + 35809 0.66 0.93137
Target:  5'- aCGGCGGCgUGGgcgagaACCUGGcGgUGCGcgCCg -3'
miRNA:   3'- -GUCGUUGgACC------UGGACC-CgACGUa-GG- -5'
14074 3' -57.1 NC_003521.1 + 196449 0.66 0.926284
Target:  5'- -cGCAccucgGCCUcGGGCgUGGGCcGCAgccCCa -3'
miRNA:   3'- guCGU-----UGGA-CCUGgACCCGaCGUa--GG- -5'
14074 3' -57.1 NC_003521.1 + 213747 0.66 0.926284
Target:  5'- -uGCAcuGCCUGcGcuACCUGGGCU-CGUCg -3'
miRNA:   3'- guCGU--UGGAC-C--UGGACCCGAcGUAGg -5'
14074 3' -57.1 NC_003521.1 + 66690 0.66 0.926284
Target:  5'- uCAGU-ACCU---CCUGGGCUGCGaCCc -3'
miRNA:   3'- -GUCGuUGGAccuGGACCCGACGUaGG- -5'
14074 3' -57.1 NC_003521.1 + 112386 0.66 0.926284
Target:  5'- gGGCGAgcgcucggucauCCUGGAgaaCCUGcGGC-GCGUCUa -3'
miRNA:   3'- gUCGUU------------GGACCU---GGAC-CCGaCGUAGG- -5'
14074 3' -57.1 NC_003521.1 + 106334 0.66 0.926284
Target:  5'- gGGCAGCCauuuguaagGGAuUUUGGGCUGCGg-- -3'
miRNA:   3'- gUCGUUGGa--------CCU-GGACCCGACGUagg -5'
14074 3' -57.1 NC_003521.1 + 13304 0.66 0.920972
Target:  5'- cCAGaucCAACaUGaGCCUGGGCUGCcugCCg -3'
miRNA:   3'- -GUC---GUUGgACcUGGACCCGACGua-GG- -5'
14074 3' -57.1 NC_003521.1 + 98430 0.66 0.920972
Target:  5'- gGGCGGCCaGGGCCgcggccuccUGGGCUaCGUUg -3'
miRNA:   3'- gUCGUUGGaCCUGG---------ACCCGAcGUAGg -5'
14074 3' -57.1 NC_003521.1 + 191931 0.66 0.920972
Target:  5'- uGGUccCCgGGGcCCUGGGCaGCGUCg -3'
miRNA:   3'- gUCGuuGGaCCU-GGACCCGaCGUAGg -5'
14074 3' -57.1 NC_003521.1 + 47422 0.66 0.920972
Target:  5'- gUAGCAucGCUcGGGCCaGGGCacaUGCAgCCg -3'
miRNA:   3'- -GUCGU--UGGaCCUGGaCCCG---ACGUaGG- -5'
14074 3' -57.1 NC_003521.1 + 92589 0.66 0.920972
Target:  5'- uGGCGGCUccGGgUUGGGUgugGCAUCCg -3'
miRNA:   3'- gUCGUUGGacCUgGACCCGa--CGUAGG- -5'
14074 3' -57.1 NC_003521.1 + 131449 0.66 0.920972
Target:  5'- -cGCGACCUGGccuGCCUGccGCUGgacgaGUCCu -3'
miRNA:   3'- guCGUUGGACC---UGGACc-CGACg----UAGG- -5'
14074 3' -57.1 NC_003521.1 + 123852 0.66 0.919334
Target:  5'- -cGCAGCUUGGGCa-GGcGCUcgcgaauguagagcGCGUCCa -3'
miRNA:   3'- guCGUUGGACCUGgaCC-CGA--------------CGUAGG- -5'
14074 3' -57.1 NC_003521.1 + 112973 0.66 0.915435
Target:  5'- gGGCAACCUGc-CCgacGGGCUGgCG-CCg -3'
miRNA:   3'- gUCGUUGGACcuGGa--CCCGAC-GUaGG- -5'
14074 3' -57.1 NC_003521.1 + 126761 0.66 0.915435
Target:  5'- gCAGCGACgUgaaguccggcaGGcCCUGGcGCUGCgcgugGUCCa -3'
miRNA:   3'- -GUCGUUGgA-----------CCuGGACC-CGACG-----UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.