miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14074 5' -59.8 NC_003521.1 + 186777 0.66 0.827661
Target:  5'- -cGGAGgcGGCggUGGuGGCGGCGGCggggGCAAg -3'
miRNA:   3'- guCCUC--CCG--ACC-CCGCUGUUGa---CGUU- -5'
14074 5' -59.8 NC_003521.1 + 207924 0.66 0.819429
Target:  5'- cCGGGGGcGGCgGGcacGGCGGCAGCaccgGCGg -3'
miRNA:   3'- -GUCCUC-CCGaCC---CCGCUGUUGa---CGUu -5'
14074 5' -59.8 NC_003521.1 + 160514 0.66 0.811039
Target:  5'- gCGGGAGGag-GGGGCGGCAGCc---- -3'
miRNA:   3'- -GUCCUCCcgaCCCCGCUGUUGacguu -5'
14074 5' -59.8 NC_003521.1 + 155256 0.66 0.802497
Target:  5'- -uGGGGGGC-GGcGGCGGCGGC-GCc- -3'
miRNA:   3'- guCCUCCCGaCC-CCGCUGUUGaCGuu -5'
14074 5' -59.8 NC_003521.1 + 165749 0.66 0.802497
Target:  5'- aGGGAGGGC---GGCGGCGGCUuGCc- -3'
miRNA:   3'- gUCCUCCCGaccCCGCUGUUGA-CGuu -5'
14074 5' -59.8 NC_003521.1 + 177733 0.66 0.793811
Target:  5'- -uGGAGGGCgGGcagcgcgccGGCG-CAGCUGUAc -3'
miRNA:   3'- guCCUCCCGaCC---------CCGCuGUUGACGUu -5'
14074 5' -59.8 NC_003521.1 + 141093 0.66 0.793811
Target:  5'- --uGAGcGGCUGGGugcGCGACGACgccUGCGAc -3'
miRNA:   3'- gucCUC-CCGACCC---CGCUGUUG---ACGUU- -5'
14074 5' -59.8 NC_003521.1 + 93973 0.66 0.793811
Target:  5'- gCGGGAGGgGC-GGaGGCGAgGACgagGCGc -3'
miRNA:   3'- -GUCCUCC-CGaCC-CCGCUgUUGa--CGUu -5'
14074 5' -59.8 NC_003521.1 + 5155 0.66 0.792934
Target:  5'- -cGGGGGGUUcauagauacgaaaGGGGCGGCGagGgUGCAc -3'
miRNA:   3'- guCCUCCCGA-------------CCCCGCUGU--UgACGUu -5'
14074 5' -59.8 NC_003521.1 + 180059 0.66 0.784988
Target:  5'- gAGGAGgcGGCgGGGauucucccGCGGCGACUGCc- -3'
miRNA:   3'- gUCCUC--CCGaCCC--------CGCUGUUGACGuu -5'
14074 5' -59.8 NC_003521.1 + 193143 0.66 0.784099
Target:  5'- gAGGGGaGGCUcauggcgGGGGCGuCuGCUGCu- -3'
miRNA:   3'- gUCCUC-CCGA-------CCCCGCuGuUGACGuu -5'
14074 5' -59.8 NC_003521.1 + 196074 0.67 0.776037
Target:  5'- gAGGuGGaCUGGcGCGAgAGCUGCAGa -3'
miRNA:   3'- gUCCuCCcGACCcCGCUgUUGACGUU- -5'
14074 5' -59.8 NC_003521.1 + 164030 0.67 0.770609
Target:  5'- gAGGAGGaGCUGGGGaauuggugguggccuCGGCcACgGCGAc -3'
miRNA:   3'- gUCCUCC-CGACCCC---------------GCUGuUGaCGUU- -5'
14074 5' -59.8 NC_003521.1 + 110667 0.67 0.766966
Target:  5'- gCAGGccAGGGCguagcgcucGGuGGCGGCAGCgGCGg -3'
miRNA:   3'- -GUCC--UCCCGa--------CC-CCGCUGUUGaCGUu -5'
14074 5' -59.8 NC_003521.1 + 92006 0.67 0.766966
Target:  5'- gCGGGAGcGGCgaGGcgcGGCGGCGGCgGCGGu -3'
miRNA:   3'- -GUCCUC-CCGa-CC---CCGCUGUUGaCGUU- -5'
14074 5' -59.8 NC_003521.1 + 51121 0.67 0.748496
Target:  5'- cCGGGAGGGCUGGuugaGACAGCacgagcGCAGc -3'
miRNA:   3'- -GUCCUCCCGACCccg-CUGUUGa-----CGUU- -5'
14074 5' -59.8 NC_003521.1 + 100568 0.67 0.739113
Target:  5'- aAGGAGGGCacgaGGaGGaCGACGAC-GCGGa -3'
miRNA:   3'- gUCCUCCCGa---CC-CC-GCUGUUGaCGUU- -5'
14074 5' -59.8 NC_003521.1 + 113596 0.67 0.739113
Target:  5'- --cGGGGGCaacgGGGGCGGCGcuCUGCu- -3'
miRNA:   3'- gucCUCCCGa---CCCCGCUGUu-GACGuu -5'
14074 5' -59.8 NC_003521.1 + 195727 0.67 0.729644
Target:  5'- gCAGGuAGcGGCUGGGGUGAUcgGGCacGCGGa -3'
miRNA:   3'- -GUCC-UC-CCGACCCCGCUG--UUGa-CGUU- -5'
14074 5' -59.8 NC_003521.1 + 99512 0.67 0.729644
Target:  5'- gCAGaaGAGGGCUccGGGGCGccgcccGCAcCUGCAc -3'
miRNA:   3'- -GUC--CUCCCGA--CCCCGC------UGUuGACGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.