miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14074 5' -59.8 NC_003521.1 + 195727 0.67 0.729644
Target:  5'- gCAGGuAGcGGCUGGGGUGAUcgGGCacGCGGa -3'
miRNA:   3'- -GUCC-UC-CCGACCCCGCUG--UUGa-CGUU- -5'
14074 5' -59.8 NC_003521.1 + 99512 0.67 0.729644
Target:  5'- gCAGaaGAGGGCUccGGGGCGccgcccGCAcCUGCAc -3'
miRNA:   3'- -GUC--CUCCCGA--CCCCGC------UGUuGACGUu -5'
14074 5' -59.8 NC_003521.1 + 98623 0.68 0.671461
Target:  5'- gAGGAGGGCgagaGcGGCGGCGGCgGUAGc -3'
miRNA:   3'- gUCCUCCCGa---CcCCGCUGUUGaCGUU- -5'
14074 5' -59.8 NC_003521.1 + 115357 0.68 0.671461
Target:  5'- aCAGGAGGucacgcgucGCUGgccaGGGcCGGCAugUGCAGg -3'
miRNA:   3'- -GUCCUCC---------CGAC----CCC-GCUGUugACGUU- -5'
14074 5' -59.8 NC_003521.1 + 111504 0.69 0.631964
Target:  5'- cCAGc-GGGCUGGcGGCGGCGGC-GCAc -3'
miRNA:   3'- -GUCcuCCCGACC-CCGCUGUUGaCGUu -5'
14074 5' -59.8 NC_003521.1 + 103644 0.69 0.622072
Target:  5'- cCAGcGGGGGCagcucGGcGGCGGCcGCUGCGg -3'
miRNA:   3'- -GUC-CUCCCGa----CC-CCGCUGuUGACGUu -5'
14074 5' -59.8 NC_003521.1 + 19293 0.69 0.622072
Target:  5'- aGGGAGGGa-GGGGgGACGACUcCGGg -3'
miRNA:   3'- gUCCUCCCgaCCCCgCUGUUGAcGUU- -5'
14074 5' -59.8 NC_003521.1 + 103064 0.69 0.622072
Target:  5'- aCAGGGcGGGUgcgcGGGCGAgGGCUGCu- -3'
miRNA:   3'- -GUCCU-CCCGac--CCCGCUgUUGACGuu -5'
14074 5' -59.8 NC_003521.1 + 98239 0.69 0.622072
Target:  5'- -cGGGGaGGCgGGGGCGGCcACgGCGGg -3'
miRNA:   3'- guCCUC-CCGaCCCCGCUGuUGaCGUU- -5'
14074 5' -59.8 NC_003521.1 + 67269 0.69 0.622072
Target:  5'- gCAGGAGGGCgggcaGGGagGACAgccGCUGCGc -3'
miRNA:   3'- -GUCCUCCCGac---CCCg-CUGU---UGACGUu -5'
14074 5' -59.8 NC_003521.1 + 216907 0.69 0.612186
Target:  5'- gAGGAGGGCgc-GGUGGCAGCggagGCGGu -3'
miRNA:   3'- gUCCUCCCGaccCCGCUGUUGa---CGUU- -5'
14074 5' -59.8 NC_003521.1 + 207116 0.69 0.612186
Target:  5'- gCGGGAGcGCUuGGGCGGagucCAGCUGCAGc -3'
miRNA:   3'- -GUCCUCcCGAcCCCGCU----GUUGACGUU- -5'
14074 5' -59.8 NC_003521.1 + 118709 0.7 0.602315
Target:  5'- gCAGGcucauGGGCgagGGGcGCGGCAccggcacggGCUGCAGg -3'
miRNA:   3'- -GUCCu----CCCGa--CCC-CGCUGU---------UGACGUU- -5'
14074 5' -59.8 NC_003521.1 + 16770 0.7 0.586566
Target:  5'- gAGGAGGGUgacgaagagucccaGGGGCGACGGC-GCc- -3'
miRNA:   3'- gUCCUCCCGa-------------CCCCGCUGUUGaCGuu -5'
14074 5' -59.8 NC_003521.1 + 347 0.71 0.515126
Target:  5'- aAGGAGGGCaaacgaUGuGGGCGGCGuGCUGUGGa -3'
miRNA:   3'- gUCCUCCCG------AC-CCCGCUGU-UGACGUU- -5'
14074 5' -59.8 NC_003521.1 + 30993 0.71 0.515126
Target:  5'- -cGGAucGGGaUGGGGCGACGACgGCGc -3'
miRNA:   3'- guCCU--CCCgACCCCGCUGUUGaCGUu -5'
14074 5' -59.8 NC_003521.1 + 40669 0.71 0.515126
Target:  5'- aAGGAGGGCaaacgaUGuGGGCGGCGuGCUGUGGa -3'
miRNA:   3'- gUCCUCCCG------AC-CCCGCUGU-UGACGUU- -5'
14074 5' -59.8 NC_003521.1 + 76318 0.73 0.416373
Target:  5'- -cGGAGG--UGGcGGCGACAGCUGCGGa -3'
miRNA:   3'- guCCUCCcgACC-CCGCUGUUGACGUU- -5'
14074 5' -59.8 NC_003521.1 + 13676 0.73 0.416373
Target:  5'- -cGGAGaGGgUGGcGGCGACGACUuGCGAg -3'
miRNA:   3'- guCCUC-CCgACC-CCGCUGUUGA-CGUU- -5'
14074 5' -59.8 NC_003521.1 + 197291 0.75 0.309636
Target:  5'- gCGGGAGGGCggcucgacgggagagGGGGCGGCAggcGCUGaCGGa -3'
miRNA:   3'- -GUCCUCCCGa--------------CCCCGCUGU---UGAC-GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.