miRNA display CGI


Results 1 - 20 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14075 3' -56.1 NC_003521.1 + 22438 0.66 0.96398
Target:  5'- gAGUACCGCccGCgCUUCACGcGGCacGCCu -3'
miRNA:   3'- -UCAUGGUGa-UG-GAGGUGC-CCGa-UGGc -5'
14075 3' -56.1 NC_003521.1 + 107658 0.66 0.96398
Target:  5'- --cGCCACUGCUggugUCC-CGGcuGCUGCUGg -3'
miRNA:   3'- ucaUGGUGAUGG----AGGuGCC--CGAUGGC- -5'
14075 3' -56.1 NC_003521.1 + 30236 0.66 0.96398
Target:  5'- cGU-CgCGCUGCaggUCCGCGcGGUUGCCGu -3'
miRNA:   3'- uCAuG-GUGAUGg--AGGUGC-CCGAUGGC- -5'
14075 3' -56.1 NC_003521.1 + 91759 0.66 0.96398
Target:  5'- -cUACC-CUACC-CCGCGGGUc-CCGc -3'
miRNA:   3'- ucAUGGuGAUGGaGGUGCCCGauGGC- -5'
14075 3' -56.1 NC_003521.1 + 177980 0.66 0.96398
Target:  5'- uGUACCAcCUGCCgggUCagagaGCGGGCcaUGCCc -3'
miRNA:   3'- uCAUGGU-GAUGG---AGg----UGCCCG--AUGGc -5'
14075 3' -56.1 NC_003521.1 + 154654 0.66 0.96398
Target:  5'- cGUGCCGCUgGCCgaggCCggcaGCGagacgcuggaGGCUACCGc -3'
miRNA:   3'- uCAUGGUGA-UGGa---GG----UGC----------CCGAUGGC- -5'
14075 3' -56.1 NC_003521.1 + 130666 0.66 0.96398
Target:  5'- gAGcGCCAUcauggcgGCCuUCCACGGGUacGCCGu -3'
miRNA:   3'- -UCaUGGUGa------UGG-AGGUGCCCGa-UGGC- -5'
14075 3' -56.1 NC_003521.1 + 28566 0.66 0.963657
Target:  5'- -cUACCGCcgGCCaCCgacuacgcggacgGCGGGCUGCUGc -3'
miRNA:   3'- ucAUGGUGa-UGGaGG-------------UGCCCGAUGGC- -5'
14075 3' -56.1 NC_003521.1 + 77954 0.66 0.960996
Target:  5'- --aGCC-CUGCUgggucuuggagccggCCGCGGGCUcGCCGu -3'
miRNA:   3'- ucaUGGuGAUGGa--------------GGUGCCCGA-UGGC- -5'
14075 3' -56.1 NC_003521.1 + 150680 0.66 0.960654
Target:  5'- cGGcGCCGCUGCUg-CugGGuGCUGCUGc -3'
miRNA:   3'- -UCaUGGUGAUGGagGugCC-CGAUGGC- -5'
14075 3' -56.1 NC_003521.1 + 196452 0.66 0.960654
Target:  5'- cGGcUGCCGCgcgaACCUCCGCuGGCacucgGCCc -3'
miRNA:   3'- -UC-AUGGUGa---UGGAGGUGcCCGa----UGGc -5'
14075 3' -56.1 NC_003521.1 + 123160 0.66 0.959266
Target:  5'- uGGUGCUGCUGCUgagguggcggcggCgGCGGGggACCGu -3'
miRNA:   3'- -UCAUGGUGAUGGa------------GgUGCCCgaUGGC- -5'
14075 3' -56.1 NC_003521.1 + 198574 0.66 0.957122
Target:  5'- -cUACCGCU--UUCgGCGGGCUagacGCCGa -3'
miRNA:   3'- ucAUGGUGAugGAGgUGCCCGA----UGGC- -5'
14075 3' -56.1 NC_003521.1 + 77627 0.66 0.957122
Target:  5'- -cUGCCGCUGCCgccgCCACcaccguguccGCUGCCGc -3'
miRNA:   3'- ucAUGGUGAUGGa---GGUGcc--------CGAUGGC- -5'
14075 3' -56.1 NC_003521.1 + 63764 0.66 0.957122
Target:  5'- aAGaGCCAgaACCUCUacaaccagcugGCGGGCaUGCUGa -3'
miRNA:   3'- -UCaUGGUgaUGGAGG-----------UGCCCG-AUGGC- -5'
14075 3' -56.1 NC_003521.1 + 71284 0.66 0.957122
Target:  5'- gGGgGCCGCggcacggGCC-CCugGGGC-ACCa -3'
miRNA:   3'- -UCaUGGUGa------UGGaGGugCCCGaUGGc -5'
14075 3' -56.1 NC_003521.1 + 202896 0.66 0.954902
Target:  5'- --aAUCACUACCUCCgccuuaugugacaccGCcgGGuGCUACCGu -3'
miRNA:   3'- ucaUGGUGAUGGAGG---------------UG--CC-CGAUGGC- -5'
14075 3' -56.1 NC_003521.1 + 45257 0.66 0.953379
Target:  5'- cGGUuaACCGCUGCUgguacugCCACuGGC-ACCGu -3'
miRNA:   3'- -UCA--UGGUGAUGGa------GGUGcCCGaUGGC- -5'
14075 3' -56.1 NC_003521.1 + 225872 0.66 0.953379
Target:  5'- aGGUGCCGgUG-CUCCAUgcgcgucuGGcGCUGCCGc -3'
miRNA:   3'- -UCAUGGUgAUgGAGGUG--------CC-CGAUGGC- -5'
14075 3' -56.1 NC_003521.1 + 185552 0.66 0.952993
Target:  5'- aAGUACUGuu-CCUCCuaguuugucccccGCGGGCUcGCCGg -3'
miRNA:   3'- -UCAUGGUgauGGAGG-------------UGCCCGA-UGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.