miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14075 5' -56.2 NC_003521.1 + 187809 0.66 0.967971
Target:  5'- gGCGGCgaCCUGgGUugGGAGuuugUGGUGGCg -3'
miRNA:   3'- gUGCUGg-GGAUgUA--CCUCu---GCCACCG- -5'
14075 5' -56.2 NC_003521.1 + 186745 0.66 0.967971
Target:  5'- gGCGAgCCCaUGC-UGGGGcuCGGcGGCa -3'
miRNA:   3'- gUGCUgGGG-AUGuACCUCu-GCCaCCG- -5'
14075 5' -56.2 NC_003521.1 + 162830 0.66 0.966774
Target:  5'- gACGACCuguCCUACAaGGAGAUccccgugaaguucGUGGCc -3'
miRNA:   3'- gUGCUGG---GGAUGUaCCUCUGc------------CACCG- -5'
14075 5' -56.2 NC_003521.1 + 133347 0.66 0.964922
Target:  5'- uCugGGCgCCggACGUGGAGAucagcaCGGUccgccGGCa -3'
miRNA:   3'- -GugCUGgGGa-UGUACCUCU------GCCA-----CCG- -5'
14075 5' -56.2 NC_003521.1 + 38061 0.66 0.964922
Target:  5'- aCGCG-CCUgUACA-GGGGuugUGGUGGCc -3'
miRNA:   3'- -GUGCuGGGgAUGUaCCUCu--GCCACCG- -5'
14075 5' -56.2 NC_003521.1 + 82179 0.66 0.964922
Target:  5'- aAUGcACCuCCcACAUGGGG--GGUGGCa -3'
miRNA:   3'- gUGC-UGG-GGaUGUACCUCugCCACCG- -5'
14075 5' -56.2 NC_003521.1 + 46246 0.66 0.964922
Target:  5'- gCACGGCCUCgACGUcgcccuCGGUGGCg -3'
miRNA:   3'- -GUGCUGGGGaUGUAccucu-GCCACCG- -5'
14075 5' -56.2 NC_003521.1 + 136147 0.66 0.964922
Target:  5'- cCACGGCCCCcucgagcuccGCGUuuuccgaaGAGGCGGcGGCg -3'
miRNA:   3'- -GUGCUGGGGa---------UGUAc-------CUCUGCCaCCG- -5'
14075 5' -56.2 NC_003521.1 + 60660 0.66 0.961675
Target:  5'- gACG-CCUCUACGgcuucacGGAcGACgaGGUGGCg -3'
miRNA:   3'- gUGCuGGGGAUGUa------CCU-CUG--CCACCG- -5'
14075 5' -56.2 NC_003521.1 + 197834 0.66 0.958225
Target:  5'- aCACGGCCgUCUGCA-GGucGuCGGUGGg -3'
miRNA:   3'- -GUGCUGG-GGAUGUaCCu-CuGCCACCg -5'
14075 5' -56.2 NC_003521.1 + 137190 0.66 0.954568
Target:  5'- aGCuGCCCCcGC-UGGAGuCGGcGGCc -3'
miRNA:   3'- gUGcUGGGGaUGuACCUCuGCCaCCG- -5'
14075 5' -56.2 NC_003521.1 + 209540 0.66 0.954568
Target:  5'- cCGCGguuauGCgCCCggcgGgGUGGcggcGACGGUGGCg -3'
miRNA:   3'- -GUGC-----UG-GGGa---UgUACCu---CUGCCACCG- -5'
14075 5' -56.2 NC_003521.1 + 64087 0.66 0.954568
Target:  5'- uGCGAgCCCgGCcUGGAGGCG--GGCu -3'
miRNA:   3'- gUGCUgGGGaUGuACCUCUGCcaCCG- -5'
14075 5' -56.2 NC_003521.1 + 28684 0.66 0.950701
Target:  5'- aCACGGCccuagagaacaCCCUGCAgaguccgaccgUGcGccAGAUGGUGGCg -3'
miRNA:   3'- -GUGCUG-----------GGGAUGU-----------AC-C--UCUGCCACCG- -5'
14075 5' -56.2 NC_003521.1 + 173706 0.66 0.950701
Target:  5'- -uCGGCCUugCUACGggucaccaUGGGGugGGUGcGCu -3'
miRNA:   3'- guGCUGGG--GAUGU--------ACCUCugCCAC-CG- -5'
14075 5' -56.2 NC_003521.1 + 160315 0.66 0.950701
Target:  5'- gCACGGCCaUCggagcCGUGGGcggcGCGGUGGCc -3'
miRNA:   3'- -GUGCUGG-GGau---GUACCUc---UGCCACCG- -5'
14075 5' -56.2 NC_003521.1 + 130922 0.66 0.950701
Target:  5'- aCACGAcgcuguccuacCCCCgcgcCGUGGAGAUGGcacgcaaGGCc -3'
miRNA:   3'- -GUGCU-----------GGGGau--GUACCUCUGCCa------CCG- -5'
14075 5' -56.2 NC_003521.1 + 167157 0.66 0.950701
Target:  5'- cUugGGCgCCUcggGCGucuUGGAGGCGGccgcGGCg -3'
miRNA:   3'- -GugCUGgGGA---UGU---ACCUCUGCCa---CCG- -5'
14075 5' -56.2 NC_003521.1 + 150504 0.66 0.949499
Target:  5'- uUACGGCgccggcggggCCCUGCuaggagcgggagccGUGGGGuccgGCGGUGGUg -3'
miRNA:   3'- -GUGCUG----------GGGAUG--------------UACCUC----UGCCACCG- -5'
14075 5' -56.2 NC_003521.1 + 129078 0.67 0.94662
Target:  5'- gCGCaGACCCucggcguaCUGCA-GGcuGugGGUGGCg -3'
miRNA:   3'- -GUG-CUGGG--------GAUGUaCCu-CugCCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.