miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14078 5' -53.8 NC_003521.1 + 188025 0.66 0.988534
Target:  5'- aAGGCGGUcCAGGUGgagccgCAcCGccGCCUGg -3'
miRNA:   3'- -UCUGCCAcGUCCACaa----GUaGC--UGGAC- -5'
14078 5' -53.8 NC_003521.1 + 180529 0.66 0.988534
Target:  5'- uAGGCGcUGCAGGUGUUguaGUUGaaGCCUa -3'
miRNA:   3'- -UCUGCcACGUCCACAAg--UAGC--UGGAc -5'
14078 5' -53.8 NC_003521.1 + 20575 0.66 0.98706
Target:  5'- uGACGGUGa---UGUUCAUCuACCUGc -3'
miRNA:   3'- uCUGCCACguccACAAGUAGcUGGAC- -5'
14078 5' -53.8 NC_003521.1 + 170777 0.66 0.983119
Target:  5'- cAGGCGGUGCAGacguuuugugacacGUG-UCcgCGuuACCUGg -3'
miRNA:   3'- -UCUGCCACGUC--------------CACaAGuaGC--UGGAC- -5'
14078 5' -53.8 NC_003521.1 + 64070 0.66 0.981756
Target:  5'- nGACGGUGCuGGgucUGUgcgagccCGGCCUGg -3'
miRNA:   3'- uCUGCCACGuCC---ACAagua---GCUGGAC- -5'
14078 5' -53.8 NC_003521.1 + 223005 0.66 0.981756
Target:  5'- uGGCGGUGgGGGUcgUCGUCcGCCg- -3'
miRNA:   3'- uCUGCCACgUCCAcaAGUAGcUGGac -5'
14078 5' -53.8 NC_003521.1 + 109263 0.66 0.981756
Target:  5'- uGACGGUGCAGGccgGUUCcUUGAa--- -3'
miRNA:   3'- uCUGCCACGUCCa--CAAGuAGCUggac -5'
14078 5' -53.8 NC_003521.1 + 201455 0.67 0.979668
Target:  5'- uGGGCGucaacuuuCGGGUGUUCAUCuacGACCUGc -3'
miRNA:   3'- -UCUGCcac-----GUCCACAAGUAG---CUGGAC- -5'
14078 5' -53.8 NC_003521.1 + 61124 0.67 0.979668
Target:  5'- gAGACGGUGaAGcccaaCAUCGACCUGc -3'
miRNA:   3'- -UCUGCCACgUCcacaaGUAGCUGGAC- -5'
14078 5' -53.8 NC_003521.1 + 1227 0.67 0.979668
Target:  5'- uGGGCGucaacuuuCGGGUGUUCAUCuacGACCUGc -3'
miRNA:   3'- -UCUGCcac-----GUCCACAAGUAG---CUGGAC- -5'
14078 5' -53.8 NC_003521.1 + 170971 0.67 0.979668
Target:  5'- cGGCGGccucaucgGCAGcg--UCAUCGACCUGc -3'
miRNA:   3'- uCUGCCa-------CGUCcacaAGUAGCUGGAC- -5'
14078 5' -53.8 NC_003521.1 + 44458 0.67 0.977408
Target:  5'- gAGGCGGUGgAaGUGUUCGcCGAgaaCCUGu -3'
miRNA:   3'- -UCUGCCACgUcCACAAGUaGCU---GGAC- -5'
14078 5' -53.8 NC_003521.1 + 107805 0.67 0.977408
Target:  5'- cGACGGUGauuaGGGUGUUCcaccgCGGCa-- -3'
miRNA:   3'- uCUGCCACg---UCCACAAGua---GCUGgac -5'
14078 5' -53.8 NC_003521.1 + 238516 0.67 0.977408
Target:  5'- cGGCGcGaGCAGGUGcgagagcUCGUCGGCCa- -3'
miRNA:   3'- uCUGC-CaCGUCCACa------AGUAGCUGGac -5'
14078 5' -53.8 NC_003521.1 + 43195 0.67 0.96952
Target:  5'- cGACcuGUGCAacGUGcUCAUCGGCCUGc -3'
miRNA:   3'- uCUGc-CACGUc-CACaAGUAGCUGGAC- -5'
14078 5' -53.8 NC_003521.1 + 24245 0.67 0.96952
Target:  5'- cGGGCGGU-CGGGcgGUauaUCGgcggCGACCUGg -3'
miRNA:   3'- -UCUGCCAcGUCCa-CA---AGUa---GCUGGAC- -5'
14078 5' -53.8 NC_003521.1 + 141221 0.68 0.967732
Target:  5'- cGGGCGcUGCAGGUcaccaacgcgccgcaGUUCuUCGACCa- -3'
miRNA:   3'- -UCUGCcACGUCCA---------------CAAGuAGCUGGac -5'
14078 5' -53.8 NC_003521.1 + 151317 0.68 0.959839
Target:  5'- aAGGCGGccagGCGGGUGg-CGUCcgagGGCCUGc -3'
miRNA:   3'- -UCUGCCa---CGUCCACaaGUAG----CUGGAC- -5'
14078 5' -53.8 NC_003521.1 + 74902 0.68 0.959839
Target:  5'- gAGACGGUgGCGgcGGUGga-GUCGGCCc- -3'
miRNA:   3'- -UCUGCCA-CGU--CCACaagUAGCUGGac -5'
14078 5' -53.8 NC_003521.1 + 150042 0.69 0.943906
Target:  5'- cGACGccacgcUGCaccGGGUGgucaUCGUCGACCUGg -3'
miRNA:   3'- uCUGCc-----ACG---UCCACa---AGUAGCUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.