miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1408 5' -54.1 NC_001335.1 + 46222 0.65 0.788478
Target:  5'- aGAACGAcgugccacGCcuuCAUCAGCCcgccagcgcgugguUCAUCGCCg -3'
miRNA:   3'- aCUUGCU--------CGu--GUGGUUGG--------------AGUGGCGG- -5'
1408 5' -54.1 NC_001335.1 + 2948 0.66 0.781484
Target:  5'- ---gUGGGCGCgAUgAAgCUCACUGCCa -3'
miRNA:   3'- acuuGCUCGUG-UGgUUgGAGUGGCGG- -5'
1408 5' -54.1 NC_001335.1 + 39572 0.66 0.780479
Target:  5'- aGGGCcGGCAuucccguCAUCAACUUCggagACCGCCu -3'
miRNA:   3'- aCUUGcUCGU-------GUGGUUGGAG----UGGCGG- -5'
1408 5' -54.1 NC_001335.1 + 1617 0.66 0.77136
Target:  5'- cGAcCGAaCGCGCCcuCCUCGaggaCGCCu -3'
miRNA:   3'- aCUuGCUcGUGUGGuuGGAGUg---GCGG- -5'
1408 5' -54.1 NC_001335.1 + 47664 0.66 0.77136
Target:  5'- cGGugGAGaugaACCGGgCUCugcCCGCCg -3'
miRNA:   3'- aCUugCUCgug-UGGUUgGAGu--GGCGG- -5'
1408 5' -54.1 NC_001335.1 + 35512 0.66 0.77136
Target:  5'- aGAAcccCGAGCuGCGCgAuggcuACCUCuacgaGCCGCCg -3'
miRNA:   3'- aCUU---GCUCG-UGUGgU-----UGGAG-----UGGCGG- -5'
1408 5' -54.1 NC_001335.1 + 17141 0.66 0.77136
Target:  5'- aUGAGCGAcgGCAgCAUCGgcuggagaGCCUgCAgCGCCg -3'
miRNA:   3'- -ACUUGCU--CGU-GUGGU--------UGGA-GUgGCGG- -5'
1408 5' -54.1 NC_001335.1 + 5316 0.66 0.77136
Target:  5'- gGGugGAGCAUGCCGucaaucgaguggAUCUUcugguguaGCUGCCa -3'
miRNA:   3'- aCUugCUCGUGUGGU------------UGGAG--------UGGCGG- -5'
1408 5' -54.1 NC_001335.1 + 45702 0.66 0.757981
Target:  5'- -cGACGAGUACaACCGACUgcuaCccaacuaggaggagACCGCCg -3'
miRNA:   3'- acUUGCUCGUG-UGGUUGGa---G--------------UGGCGG- -5'
1408 5' -54.1 NC_001335.1 + 38229 0.66 0.750683
Target:  5'- cUGGACGGuaGCugCGAUCcggUAUCGCCg -3'
miRNA:   3'- -ACUUGCUcgUGugGUUGGa--GUGGCGG- -5'
1408 5' -54.1 NC_001335.1 + 24205 0.66 0.750683
Target:  5'- cUGGccGCGAGC--GCCAGCaC-CGCCGCUc -3'
miRNA:   3'- -ACU--UGCUCGugUGGUUG-GaGUGGCGG- -5'
1408 5' -54.1 NC_001335.1 + 40997 0.66 0.740154
Target:  5'- -cGACGAcGCAUgaGCCugUCUCACgGCCc -3'
miRNA:   3'- acUUGCU-CGUG--UGGuuGGAGUGgCGG- -5'
1408 5' -54.1 NC_001335.1 + 12530 0.66 0.740154
Target:  5'- aGAACGAGgAguaACCcguGGCCUacgcgACCGCCg -3'
miRNA:   3'- aCUUGCUCgUg--UGG---UUGGAg----UGGCGG- -5'
1408 5' -54.1 NC_001335.1 + 25109 0.66 0.740154
Target:  5'- -cAGCGGGCACGCgGAg--CGCCGCa -3'
miRNA:   3'- acUUGCUCGUGUGgUUggaGUGGCGg -5'
1408 5' -54.1 NC_001335.1 + 38762 0.66 0.740154
Target:  5'- -cGACGcAGCGgagACCGgcgaggGCUUCGCCGCCg -3'
miRNA:   3'- acUUGC-UCGUg--UGGU------UGGAGUGGCGG- -5'
1408 5' -54.1 NC_001335.1 + 22717 0.67 0.729514
Target:  5'- aUGGACGAagGCA-ACCAGCagaaCACCGCg -3'
miRNA:   3'- -ACUUGCU--CGUgUGGUUGga--GUGGCGg -5'
1408 5' -54.1 NC_001335.1 + 18090 0.67 0.729514
Target:  5'- -uGAUGAGCGCACCGgucgACUUCGCgaaaGCg -3'
miRNA:   3'- acUUGCUCGUGUGGU----UGGAGUGg---CGg -5'
1408 5' -54.1 NC_001335.1 + 38104 0.67 0.729514
Target:  5'- cGAucuGCGAGgGagaACuCGACacgaUCACCGCCg -3'
miRNA:   3'- aCU---UGCUCgUg--UG-GUUGg---AGUGGCGG- -5'
1408 5' -54.1 NC_001335.1 + 37261 0.67 0.729514
Target:  5'- aGGACGAGCGguaucCCAagggGCCUCGCCaGUg -3'
miRNA:   3'- aCUUGCUCGUgu---GGU----UGGAGUGG-CGg -5'
1408 5' -54.1 NC_001335.1 + 32067 0.67 0.729514
Target:  5'- cUGAcCGAGCugG--AGCgUCACCGUCa -3'
miRNA:   3'- -ACUuGCUCGugUggUUGgAGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.