Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 14086 | 3' | -54.5 | NC_003521.1 | + | 85937 | 0.7 | 0.868533 |
|
Target: 5'- gCACGuUCUCGCGCCGCGagcGCUUa-- -3' miRNA: 3'- -GUGC-GGAGCGCGGCGCaaaUGAAgac -5' |
|||||||
| 14086 | 3' | -54.5 | NC_003521.1 | + | 139852 | 0.73 | 0.720755 |
|
Target: 5'- aACGCCgugCGCGCCGgGcacggcGCUUCUGu -3' miRNA: 3'- gUGCGGa--GCGCGGCgCaaa---UGAAGAC- -5' |
|||||||
| 14086 | 3' | -54.5 | NC_003521.1 | + | 200342 | 0.73 | 0.720755 |
|
Target: 5'- gGCGCCguggCGCGCCGCGgacACaUCUa -3' miRNA: 3'- gUGCGGa---GCGCGGCGCaaaUGaAGAc -5' |
|||||||
| 14086 | 3' | -54.5 | NC_003521.1 | + | 233739 | 0.74 | 0.681364 |
|
Target: 5'- gACGCCgC-CGCCGCGUcUGCUUCUu -3' miRNA: 3'- gUGCGGaGcGCGGCGCAaAUGAAGAc -5' |
|||||||
| 14086 | 3' | -54.5 | NC_003521.1 | + | 87968 | 0.75 | 0.650378 |
|
Target: 5'- cUACGCCUCGCGgCGCGaggACUcggugaaUCUGg -3' miRNA: 3'- -GUGCGGAGCGCgGCGCaaaUGA-------AGAC- -5' |
|||||||
| 14086 | 3' | -54.5 | NC_003521.1 | + | 164607 | 0.75 | 0.641346 |
|
Target: 5'- gCGCGCCcagggCGUGCCgGCGg--GCUUCUGg -3' miRNA: 3'- -GUGCGGa----GCGCGG-CGCaaaUGAAGAC- -5' |
|||||||
| 14086 | 3' | -54.5 | NC_003521.1 | + | 136824 | 1.07 | 0.008596 |
|
Target: 5'- uCACGCCUCGCGCCGCGUUUACUUCUGc -3' miRNA: 3'- -GUGCGGAGCGCGGCGCAAAUGAAGAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home