miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 146518 0.67 0.952689
Target:  5'- cCGCAGAAAcgGCGgcuccaccCGGGuccCUCcgGCGGCGGc -3'
miRNA:   3'- -GCGUCUUUa-CGU--------GCCU---GAG--CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 31711 0.67 0.952689
Target:  5'- gGCAGcaugugcgcGUGCugGGACgcCGCGGCc- -3'
miRNA:   3'- gCGUCuu-------UACGugCCUGa-GCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 170121 0.67 0.948708
Target:  5'- uCGUAGcuGUaCGCGGACUCGCaGGacaCGGa -3'
miRNA:   3'- -GCGUCuuUAcGUGCCUGAGCG-CC---GCC- -5'
14086 5' -55.4 NC_003521.1 + 34511 0.67 0.948708
Target:  5'- gCGCAGGuaGcgGcCGCGGGCcgagacgCGCGaGCGGc -3'
miRNA:   3'- -GCGUCU--UuaC-GUGCCUGa------GCGC-CGCC- -5'
14086 5' -55.4 NC_003521.1 + 166841 0.67 0.948708
Target:  5'- aCGguGAGGauacGCagGCGGuggCGCGGCGGg -3'
miRNA:   3'- -GCguCUUUa---CG--UGCCugaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 83750 0.67 0.948708
Target:  5'- cCGCGGggGgcCugGGACaggGUGGCGGc -3'
miRNA:   3'- -GCGUCuuUacGugCCUGag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 193274 0.67 0.948708
Target:  5'- uGCGGAGcggGUGCcgggACGGGCgucggagucggCGCGGgGGu -3'
miRNA:   3'- gCGUCUU---UACG----UGCCUGa----------GCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 177458 0.67 0.952689
Target:  5'- cCGUAGAAGcUGCugACGGuCUgCGCGGCcguGGa -3'
miRNA:   3'- -GCGUCUUU-ACG--UGCCuGA-GCGCCG---CC- -5'
14086 5' -55.4 NC_003521.1 + 129284 0.67 0.952689
Target:  5'- gGUAGAGGcGCcgGCGGuACUUuuugagcgGCGGCGGg -3'
miRNA:   3'- gCGUCUUUaCG--UGCC-UGAG--------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 148410 0.67 0.963367
Target:  5'- uGCgAGGGAgccaugGUGCGGGCggccgCGCcGGCGGc -3'
miRNA:   3'- gCG-UCUUUa-----CGUGCCUGa----GCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 88500 0.67 0.963367
Target:  5'- gGUAGAGcgGCACGcgcagcGACUCGCagccgugcaGGCGc -3'
miRNA:   3'- gCGUCUUuaCGUGC------CUGAGCG---------CCGCc -5'
14086 5' -55.4 NC_003521.1 + 208929 0.67 0.952689
Target:  5'- cCGCAGuuccuGUGcCGCGGcCUgGCGGUGcGg -3'
miRNA:   3'- -GCGUCuu---UAC-GUGCCuGAgCGCCGC-C- -5'
14086 5' -55.4 NC_003521.1 + 203689 0.67 0.958616
Target:  5'- aGCAGAAGccgcgcggcauguUGCGCGccgugaucuuguccGACaCGCGGUGGc -3'
miRNA:   3'- gCGUCUUU-------------ACGUGC--------------CUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 182361 0.67 0.956089
Target:  5'- gGCAGAcccuggucgacguGGUGCGCGGAaagUUCGCccGGCa- -3'
miRNA:   3'- gCGUCU-------------UUACGUGCCU---GAGCG--CCGcc -5'
14086 5' -55.4 NC_003521.1 + 29841 0.67 0.956457
Target:  5'- uGCAGA--UGCACGGACUguucaCGCc-CGGg -3'
miRNA:   3'- gCGUCUuuACGUGCCUGA-----GCGccGCC- -5'
14086 5' -55.4 NC_003521.1 + 123052 0.67 0.959319
Target:  5'- cCGCcaccaugcUGCugGGACggcgGCGGCGGa -3'
miRNA:   3'- -GCGucuuu---ACGugCCUGag--CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 148446 0.67 0.960015
Target:  5'- gGCGGAgcgAcgGCAgCGGGCgaGCGGaCGGg -3'
miRNA:   3'- gCGUCU---UuaCGU-GCCUGagCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 160307 0.67 0.964651
Target:  5'- gGCGGugg-GCACGGccaucggagccguggGCggCGCGGUGGc -3'
miRNA:   3'- gCGUCuuuaCGUGCC---------------UGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 184341 0.67 0.963367
Target:  5'- cCGCAGuacUGCcucuucggGCGGGCcguggCGCGGCGc -3'
miRNA:   3'- -GCGUCuuuACG--------UGCCUGa----GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 16991 0.67 0.963367
Target:  5'- cCGCAGGGAcaGCAgGcGCcCGCGGUGGc -3'
miRNA:   3'- -GCGUCUUUa-CGUgCcUGaGCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.