miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 163370 0.67 0.952689
Target:  5'- gGCGGcAGUGuCACGGGCaccaaCGGCGGc -3'
miRNA:   3'- gCGUCuUUAC-GUGCCUGagc--GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 11565 0.67 0.948708
Target:  5'- gCGCcGucGUGCGcCGGACUCuGCGG-GGu -3'
miRNA:   3'- -GCGuCuuUACGU-GCCUGAG-CGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 160307 0.67 0.964651
Target:  5'- gGCGGugg-GCACGGccaucggagccguggGCggCGCGGUGGc -3'
miRNA:   3'- gCGUCuuuaCGUGCC---------------UGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 16991 0.67 0.963367
Target:  5'- cCGCAGGGAcaGCAgGcGCcCGCGGUGGc -3'
miRNA:   3'- -GCGUCUUUa-CGUgCcUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 182361 0.67 0.956089
Target:  5'- gGCAGAcccuggucgacguGGUGCGCGGAaagUUCGCccGGCa- -3'
miRNA:   3'- gCGUCU-------------UUACGUGCCU---GAGCG--CCGcc -5'
14086 5' -55.4 NC_003521.1 + 29841 0.67 0.956457
Target:  5'- uGCAGA--UGCACGGACUguucaCGCc-CGGg -3'
miRNA:   3'- gCGUCUuuACGUGCCUGA-----GCGccGCC- -5'
14086 5' -55.4 NC_003521.1 + 203689 0.67 0.958616
Target:  5'- aGCAGAAGccgcgcggcauguUGCGCGccgugaucuuguccGACaCGCGGUGGc -3'
miRNA:   3'- gCGUCUUU-------------ACGUGC--------------CUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 112958 0.67 0.947886
Target:  5'- cCGCccGAGAUGCGCuacuacaugccGCUCaGCGGCGGg -3'
miRNA:   3'- -GCGu-CUUUACGUGcc---------UGAG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 123199 0.67 0.948708
Target:  5'- gGCGGAAcgacaccggGUcGCugGGACccUCGCuGCGGu -3'
miRNA:   3'- gCGUCUU---------UA-CGugCCUG--AGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 184341 0.67 0.963367
Target:  5'- cCGCAGuacUGCcucuucggGCGGGCcguggCGCGGCGc -3'
miRNA:   3'- -GCGUCuuuACG--------UGCCUGa----GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 148446 0.67 0.960015
Target:  5'- gGCGGAgcgAcgGCAgCGGGCgaGCGGaCGGg -3'
miRNA:   3'- gCGUCU---UuaCGU-GCCUGagCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 123052 0.67 0.959319
Target:  5'- cCGCcaccaugcUGCugGGACggcgGCGGCGGa -3'
miRNA:   3'- -GCGucuuu---ACGugCCUGag--CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 78112 0.68 0.935459
Target:  5'- aCGCAgcccGAGAUGUACaccuugguGGGCgcguuaGCGGCGGc -3'
miRNA:   3'- -GCGU----CUUUACGUG--------CCUGag----CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 190533 0.68 0.930601
Target:  5'- aGC-GAGGUGCgGCGGcaGCa-GCGGCGGa -3'
miRNA:   3'- gCGuCUUUACG-UGCC--UGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 240144 0.68 0.925521
Target:  5'- gCGCGGAAA-GCGCuGGCUCaUGGCGu -3'
miRNA:   3'- -GCGUCUUUaCGUGcCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 169440 0.68 0.920219
Target:  5'- aCGCGGAcgAcgGCGuCGG-Cg-GCGGCGGg -3'
miRNA:   3'- -GCGUCU--UuaCGU-GCCuGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 34926 0.68 0.930601
Target:  5'- aGCAGuAGcgGCGCaGACccucguagUCGCGGCGc -3'
miRNA:   3'- gCGUC-UUuaCGUGcCUG--------AGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 63230 0.68 0.935459
Target:  5'- aGCGGAAcgGC-CGGAaccgGCGGCGc -3'
miRNA:   3'- gCGUCUUuaCGuGCCUgag-CGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 66279 0.68 0.935459
Target:  5'- aGCAGGAggGagGCGGACUgGCGGgcacagccgaccCGGa -3'
miRNA:   3'- gCGUCUUuaCg-UGCCUGAgCGCC------------GCC- -5'
14086 5' -55.4 NC_003521.1 + 89003 0.68 0.935459
Target:  5'- -aCAGAAAUGcCGCGGGCcccaccggCGCcacGGCGGu -3'
miRNA:   3'- gcGUCUUUAC-GUGCCUGa-------GCG---CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.