miRNA display CGI


Results 101 - 120 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 166919 0.68 0.918585
Target:  5'- gGCAGAGGUagacggggcccacgGCcuuGCGGAuCUCG-GGCGGg -3'
miRNA:   3'- gCGUCUUUA--------------CG---UGCCU-GAGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 120354 0.68 0.919676
Target:  5'- gGCGGAGAcaccuGCGGACgucgcuguauuauUUGCGGCGGa -3'
miRNA:   3'- gCGUCUUUacg--UGCCUG-------------AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 118619 0.68 0.920219
Target:  5'- uCGCAGGca-GCAUGGAgUCGCgagGGCGu -3'
miRNA:   3'- -GCGUCUuuaCGUGCCUgAGCG---CCGCc -5'
14086 5' -55.4 NC_003521.1 + 191373 0.68 0.940095
Target:  5'- aGCAGAAGcGCGCaGACggCGUGGaGGa -3'
miRNA:   3'- gCGUCUUUaCGUGcCUGa-GCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 66279 0.68 0.935459
Target:  5'- aGCAGGAggGagGCGGACUgGCGGgcacagccgaccCGGa -3'
miRNA:   3'- gCGUCUUuaCg-UGCCUGAgCGCC------------GCC- -5'
14086 5' -55.4 NC_003521.1 + 216832 0.68 0.940095
Target:  5'- gCGCAGGAGgucGCA---GCcCGCGGCGGa -3'
miRNA:   3'- -GCGUCUUUa--CGUgccUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 78112 0.68 0.935459
Target:  5'- aCGCAgcccGAGAUGUACaccuugguGGGCgcguuaGCGGCGGc -3'
miRNA:   3'- -GCGU----CUUUACGUG--------CCUGag----CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 63230 0.68 0.935459
Target:  5'- aGCGGAAcgGC-CGGAaccgGCGGCGc -3'
miRNA:   3'- gCGUCUUuaCGuGCCUgag-CGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 34926 0.68 0.930601
Target:  5'- aGCAGuAGcgGCGCaGACccucguagUCGCGGCGc -3'
miRNA:   3'- gCGUC-UUuaCGUGcCUG--------AGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 240144 0.68 0.925521
Target:  5'- gCGCGGAAA-GCGCuGGCUCaUGGCGu -3'
miRNA:   3'- -GCGUCUUUaCGUGcCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 178625 0.68 0.925521
Target:  5'- uGCGGAuuUGCACGuuGCgUCGUuGGCGGu -3'
miRNA:   3'- gCGUCUuuACGUGCc-UG-AGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 52574 0.68 0.925521
Target:  5'- gGCAGAAGacgucGCGCGGGCa-GCuGGUGGc -3'
miRNA:   3'- gCGUCUUUa----CGUGCCUGagCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 123791 0.68 0.925001
Target:  5'- aCGCAGAgGAUGCcucguucGCGGucCUCGuuGCGGu -3'
miRNA:   3'- -GCGUCU-UUACG-------UGCCu-GAGCgcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 113527 0.68 0.920219
Target:  5'- gCGCAGcg--GCugGGAuccCUCGCGcCGGg -3'
miRNA:   3'- -GCGUCuuuaCGugCCU---GAGCGCcGCC- -5'
14086 5' -55.4 NC_003521.1 + 103759 0.68 0.944511
Target:  5'- gGCGGAAGacaGCAgGGGC-CG-GGCGGu -3'
miRNA:   3'- gCGUCUUUa--CGUgCCUGaGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 76481 0.68 0.944511
Target:  5'- gGUAGGAGcUGuCGCcgGGACgCGUGGCGGc -3'
miRNA:   3'- gCGUCUUU-AC-GUG--CCUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 111080 0.68 0.940095
Target:  5'- gGCGGcgaaGAcgGCGCGGACgCGCucGGCGu -3'
miRNA:   3'- gCGUC----UUuaCGUGCCUGaGCG--CCGCc -5'
14086 5' -55.4 NC_003521.1 + 130946 0.68 0.935459
Target:  5'- cCGUGGAGAUgGCACGcaaGGCcuucacCGCGGUGGg -3'
miRNA:   3'- -GCGUCUUUA-CGUGC---CUGa-----GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 93040 0.68 0.934983
Target:  5'- uGCAGGug-GCGCuGGGCUucaacacCGUGGUGGu -3'
miRNA:   3'- gCGUCUuuaCGUG-CCUGA-------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 89003 0.68 0.935459
Target:  5'- -aCAGAAAUGcCGCGGGCcccaccggCGCcacGGCGGu -3'
miRNA:   3'- gcGUCUUUAC-GUGCCUGa-------GCG---CCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.