miRNA display CGI


Results 121 - 140 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 163217 0.68 0.939641
Target:  5'- gGCAGuagcuccGGcgGcCugGGACUCGCGGaCGa -3'
miRNA:   3'- gCGUC-------UUuaC-GugCCUGAGCGCC-GCc -5'
14086 5' -55.4 NC_003521.1 + 216832 0.68 0.940095
Target:  5'- gCGCAGGAGgucGCA---GCcCGCGGCGGa -3'
miRNA:   3'- -GCGUCUUUa--CGUgccUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 191373 0.68 0.940095
Target:  5'- aGCAGAAGcGCGCaGACggCGUGGaGGa -3'
miRNA:   3'- gCGUCUUUaCGUGcCUGa-GCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 140146 0.68 0.944511
Target:  5'- cCGUGGAGAUGCA-GGAggUGgGGUGGu -3'
miRNA:   3'- -GCGUCUUUACGUgCCUgaGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 52574 0.68 0.925521
Target:  5'- gGCAGAAGacgucGCGCGGGCa-GCuGGUGGc -3'
miRNA:   3'- gCGUCUUUa----CGUGCCUGagCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 123791 0.68 0.925001
Target:  5'- aCGCAGAgGAUGCcucguucGCGGucCUCGuuGCGGu -3'
miRNA:   3'- -GCGUCU-UUACG-------UGCCu-GAGCgcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 130946 0.68 0.935459
Target:  5'- cCGUGGAGAUgGCACGcaaGGCcuucacCGCGGUGGg -3'
miRNA:   3'- -GCGUCUUUA-CGUGC---CUGa-----GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 35087 0.69 0.896802
Target:  5'- gCGCucGAcAUGC-CGGAUUCGaGGCGGc -3'
miRNA:   3'- -GCGu-CUuUACGuGCCUGAGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 71275 0.69 0.896802
Target:  5'- gGCGGAg--GCGgGGGC-CGCGGCa- -3'
miRNA:   3'- gCGUCUuuaCGUgCCUGaGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 236136 0.69 0.902984
Target:  5'- aCGCGGggGUuCACgGGACUugagcaagaUGCGGCGu -3'
miRNA:   3'- -GCGUCuuUAcGUG-CCUGA---------GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 6073 0.69 0.908949
Target:  5'- --aGGGAAUGCgACGGcCggUGCGGCGGc -3'
miRNA:   3'- gcgUCUUUACG-UGCCuGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 43470 0.69 0.896802
Target:  5'- aGCGGGccaGCGCGGcggccgugcugGC-CGCGGCGGc -3'
miRNA:   3'- gCGUCUuuaCGUGCC-----------UGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 99665 0.69 0.908949
Target:  5'- aCGUAGGccauggcccGGUGCACGGGgUUGCcgaaggucucgGGCGGc -3'
miRNA:   3'- -GCGUCU---------UUACGUGCCUgAGCG-----------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 40877 0.69 0.908949
Target:  5'- cCGCGGAGGga-AgGGAC-CGgGGCGGg -3'
miRNA:   3'- -GCGUCUUUacgUgCCUGaGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 152148 0.69 0.912994
Target:  5'- aGCAGuucgGCGCGGuACUCGCucaugcucagcaucGGCGa -3'
miRNA:   3'- gCGUCuuuaCGUGCC-UGAGCG--------------CCGCc -5'
14086 5' -55.4 NC_003521.1 + 212052 0.69 0.908949
Target:  5'- gCGCAGAAAgugcaGCGCuaGGGCgguggCGCGGCc- -3'
miRNA:   3'- -GCGUCUUUa----CGUG--CCUGa----GCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 98237 0.69 0.908949
Target:  5'- gGCGGGGAgGCGgGGGCggcCaCGGCGGg -3'
miRNA:   3'- gCGUCUUUaCGUgCCUGa--GcGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 111478 0.69 0.901152
Target:  5'- cCGCcuGGAGuggGUcuacuuccugaccaGCGGGCUgGCGGCGGc -3'
miRNA:   3'- -GCG--UCUUua-CG--------------UGCCUGAgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 103316 0.69 0.896802
Target:  5'- aCGCGGcgcUGCACGucccaGAcCUCGCGGCGc -3'
miRNA:   3'- -GCGUCuuuACGUGC-----CU-GAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 228975 0.69 0.914694
Target:  5'- cCGaGGAGGUGCGCGGGCggCGCaGGacCGGc -3'
miRNA:   3'- -GCgUCUUUACGUGCCUGa-GCG-CC--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.