Results 41 - 60 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14086 | 5' | -55.4 | NC_003521.1 | + | 164202 | 0.71 | 0.815584 |
Target: 5'- gGCGGAAcgGCG-GGGCg-GCGGUGGu -3' miRNA: 3'- gCGUCUUuaCGUgCCUGagCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 209540 | 0.71 | 0.823872 |
Target: 5'- cCGCGGuuAUGCgcccgGCGGGgUgGCGGCGa -3' miRNA: 3'- -GCGUCuuUACG-----UGCCUgAgCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 6383 | 0.71 | 0.815584 |
Target: 5'- uCGCGGAGggGCGCcgcaGCUacCGCGGCGGc -3' miRNA: 3'- -GCGUCUUuaCGUGcc--UGA--GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 192039 | 0.71 | 0.807141 |
Target: 5'- cCGCcGgcGUGCGCGGcagacgcgGCgucCGCGGCGGu -3' miRNA: 3'- -GCGuCuuUACGUGCC--------UGa--GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 150643 | 0.71 | 0.807141 |
Target: 5'- gGCGGGGgcGUGCGCGacgaaggcGGCUCuccgGCGGCGGc -3' miRNA: 3'- gCGUCUU--UACGUGC--------CUGAG----CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 97609 | 0.71 | 0.814747 |
Target: 5'- aGCAGGugcAGUGCACGucgucgugcucaGGCucgacguUCGCGGCGGc -3' miRNA: 3'- gCGUCU---UUACGUGC------------CUG-------AGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 83585 | 0.71 | 0.839955 |
Target: 5'- uGCucu--UGguCGGAcCUCGCGGCGGc -3' miRNA: 3'- gCGucuuuACguGCCU-GAGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 177754 | 0.71 | 0.839955 |
Target: 5'- gCGCAGc--UGUACGGGgUCGCGGUc- -3' miRNA: 3'- -GCGUCuuuACGUGCCUgAGCGCCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 164743 | 0.7 | 0.85383 |
Target: 5'- gCGCGGGAGggggGCAucgcggucgcCGGGCgaaccauagugaCGCGGCGGg -3' miRNA: 3'- -GCGUCUUUa---CGU----------GCCUGa-----------GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 125836 | 0.7 | 0.869963 |
Target: 5'- --------cGCGuCGGGCUCGCGGUGGu -3' miRNA: 3'- gcgucuuuaCGU-GCCUGAGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 133756 | 0.7 | 0.869963 |
Target: 5'- gGCAGGcccgGCGauucCGGGgaCGCGGCGGa -3' miRNA: 3'- gCGUCUuua-CGU----GCCUgaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 137475 | 0.7 | 0.876982 |
Target: 5'- aGUGGAAggGCGCcggcGugUCGCGGCGc -3' miRNA: 3'- gCGUCUUuaCGUGc---CugAGCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 192342 | 0.7 | 0.876982 |
Target: 5'- cCGuCAGAugGGUGCuCGGuGCUCGCacgGGCGGc -3' miRNA: 3'- -GC-GUCU--UUACGuGCC-UGAGCG---CCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 31161 | 0.7 | 0.862746 |
Target: 5'- gCGCAgcGAGAUGCAacgguaguCGGGgaUGCGGUGGa -3' miRNA: 3'- -GCGU--CUUUACGU--------GCCUgaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 238747 | 0.7 | 0.876982 |
Target: 5'- aGCAGAAGUcggGCcgGCGGAgCUCGacagaGGUGGg -3' miRNA: 3'- gCGUCUUUA---CG--UGCCU-GAGCg----CCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 238454 | 0.7 | 0.883125 |
Target: 5'- gCGCAGGGcgGCcucggcgggcgggGCGGAgaCGCGGCccaGGg -3' miRNA: 3'- -GCGUCUUuaCG-------------UGCCUgaGCGCCG---CC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 32130 | 0.7 | 0.862746 |
Target: 5'- gGCAGGuagcggGCGCGGuGCaccaaGCGGCGGa -3' miRNA: 3'- gCGUCUuua---CGUGCC-UGag---CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 76967 | 0.7 | 0.855335 |
Target: 5'- uCGCGGccGAUGCGCGuGauGCUgGCGGCGa -3' miRNA: 3'- -GCGUCu-UUACGUGC-C--UGAgCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 92005 | 0.7 | 0.855335 |
Target: 5'- aGCGGGAGcggcgagGCGCGGcgGCg-GCGGCGGu -3' miRNA: 3'- gCGUCUUUa------CGUGCC--UGagCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 222786 | 0.7 | 0.847736 |
Target: 5'- gCGCAGAGGaacuucUGCACGugguagcgcGGCUCGgUGGUGGa -3' miRNA: 3'- -GCGUCUUU------ACGUGC---------CUGAGC-GCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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