miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 37430 0.7 0.867818
Target:  5'- gCGCGGcgccgagccucugaAGGUGaCGCuguGGGCUCGCGcGCGGg -3'
miRNA:   3'- -GCGUC--------------UUUAC-GUG---CCUGAGCGC-CGCC- -5'
14086 5' -55.4 NC_003521.1 + 114828 0.7 0.869963
Target:  5'- gGCGGccacGGUGCACGGACagaaGGCGGu -3'
miRNA:   3'- gCGUCu---UUACGUGCCUGagcgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 21948 0.7 0.869963
Target:  5'- gGCuGGA--GCAgUGGGCgagCGCGGCGGg -3'
miRNA:   3'- gCGuCUUuaCGU-GCCUGa--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 7955 0.7 0.869963
Target:  5'- -cCAGAucgcCGCGGugUCGCGGcCGGg -3'
miRNA:   3'- gcGUCUuuacGUGCCugAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 133756 0.7 0.869963
Target:  5'- gGCAGGcccgGCGauucCGGGgaCGCGGCGGa -3'
miRNA:   3'- gCGUCUuua-CGU----GCCUgaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 125836 0.7 0.869963
Target:  5'- --------cGCGuCGGGCUCGCGGUGGu -3'
miRNA:   3'- gcgucuuuaCGU-GCCUGAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 117212 0.7 0.869963
Target:  5'- gGUGGAGAUGUcgcacccgcugACGG-C-CGCGGCGGc -3'
miRNA:   3'- gCGUCUUUACG-----------UGCCuGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 38520 0.7 0.876982
Target:  5'- aGCAGAAGUcggGCcgGCGGAgCUCGacagaGGUGGg -3'
miRNA:   3'- gCGUCUUUA---CG--UGCCU-GAGCg----CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 192342 0.7 0.876982
Target:  5'- cCGuCAGAugGGUGCuCGGuGCUCGCacgGGCGGc -3'
miRNA:   3'- -GC-GUCU--UUACGuGCC-UGAGCG---CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 137475 0.7 0.876982
Target:  5'- aGUGGAAggGCGCcggcGugUCGCGGCGc -3'
miRNA:   3'- gCGUCUUuaCGUGc---CugAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 238747 0.7 0.876982
Target:  5'- aGCAGAAGUcggGCcgGCGGAgCUCGacagaGGUGGg -3'
miRNA:   3'- gCGUCUUUA---CG--UGCCU-GAGCg----CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 38226 0.7 0.883125
Target:  5'- gCGCAGGGcgGCcucggcgggcgggGCGGAgaCGCGGCccaGGg -3'
miRNA:   3'- -GCGUCUUuaCG-------------UGCCUgaGCGCCG---CC- -5'
14086 5' -55.4 NC_003521.1 + 238454 0.7 0.883125
Target:  5'- gCGCAGGGcgGCcucggcgggcgggGCGGAgaCGCGGCccaGGg -3'
miRNA:   3'- -GCGUCUUuaCG-------------UGCCUgaGCGCCG---CC- -5'
14086 5' -55.4 NC_003521.1 + 107436 0.7 0.883797
Target:  5'- aCGC-GAAA-GCGCGGAC-CGCcgcgcugugccGGCGGa -3'
miRNA:   3'- -GCGuCUUUaCGUGCCUGaGCG-----------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 49667 0.7 0.883797
Target:  5'- uGgAGAGggGC-CGGGCgagCGCGGCGc -3'
miRNA:   3'- gCgUCUUuaCGuGCCUGa--GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 183784 0.7 0.886466
Target:  5'- gGCAGGAcgaGUGCcUGGGCggcguguucauccgCGUGGCGGc -3'
miRNA:   3'- gCGUCUU---UACGuGCCUGa-------------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 197522 0.69 0.889754
Target:  5'- cCGgGGAAcgGUugucgaggagucgGCGGACgagaGCGGCGGc -3'
miRNA:   3'- -GCgUCUUuaCG-------------UGCCUGag--CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 77094 0.69 0.890405
Target:  5'- uGCGGc---GCAUGGGgUCGCGGCa- -3'
miRNA:   3'- gCGUCuuuaCGUGCCUgAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 211566 0.69 0.890405
Target:  5'- aGcCAGua--GCGCGcacGCUCGCGGCGGu -3'
miRNA:   3'- gC-GUCuuuaCGUGCc--UGAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 35087 0.69 0.896802
Target:  5'- gCGCucGAcAUGC-CGGAUUCGaGGCGGc -3'
miRNA:   3'- -GCGu-CUuUACGuGCCUGAGCgCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.