Results 81 - 100 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14086 | 5' | -55.4 | NC_003521.1 | + | 128938 | 0.69 | 0.896802 |
Target: 5'- gCGCGGAAG-GUACguccgaacgagGGGCUgGCGGCGu -3' miRNA: 3'- -GCGUCUUUaCGUG-----------CCUGAgCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 43470 | 0.69 | 0.896802 |
Target: 5'- aGCGGGccaGCGCGGcggccgugcugGC-CGCGGCGGc -3' miRNA: 3'- gCGUCUuuaCGUGCC-----------UGaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 35087 | 0.69 | 0.896802 |
Target: 5'- gCGCucGAcAUGC-CGGAUUCGaGGCGGc -3' miRNA: 3'- -GCGu-CUuUACGuGCCUGAGCgCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 166623 | 0.69 | 0.896802 |
Target: 5'- gGCAGAAGacgGCGuCGGGCcgCGCGcCGGg -3' miRNA: 3'- gCGUCUUUa--CGU-GCCUGa-GCGCcGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 56784 | 0.69 | 0.896802 |
Target: 5'- aGCuGcuGUGCGCgaGGGCUCGCGaCGGc -3' miRNA: 3'- gCGuCuuUACGUG--CCUGAGCGCcGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 78201 | 0.69 | 0.896802 |
Target: 5'- uGCGGAGcggGCGCGGcGCUCGuCGGaGGc -3' miRNA: 3'- gCGUCUUua-CGUGCC-UGAGC-GCCgCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 103316 | 0.69 | 0.896802 |
Target: 5'- aCGCGGcgcUGCACGucccaGAcCUCGCGGCGc -3' miRNA: 3'- -GCGUCuuuACGUGC-----CU-GAGCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 111478 | 0.69 | 0.901152 |
Target: 5'- cCGCcuGGAGuggGUcuacuuccugaccaGCGGGCUgGCGGCGGc -3' miRNA: 3'- -GCG--UCUUua-CG--------------UGCCUGAgCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 236136 | 0.69 | 0.902984 |
Target: 5'- aCGCGGggGUuCACgGGACUugagcaagaUGCGGCGu -3' miRNA: 3'- -GCGUCuuUAcGUG-CCUGA---------GCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 6073 | 0.69 | 0.908949 |
Target: 5'- --aGGGAAUGCgACGGcCggUGCGGCGGc -3' miRNA: 3'- gcgUCUUUACG-UGCCuGa-GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 40877 | 0.69 | 0.908949 |
Target: 5'- cCGCGGAGGga-AgGGAC-CGgGGCGGg -3' miRNA: 3'- -GCGUCUUUacgUgCCUGaGCgCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 99665 | 0.69 | 0.908949 |
Target: 5'- aCGUAGGccauggcccGGUGCACGGGgUUGCcgaaggucucgGGCGGc -3' miRNA: 3'- -GCGUCU---------UUACGUGCCUgAGCG-----------CCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 212052 | 0.69 | 0.908949 |
Target: 5'- gCGCAGAAAgugcaGCGCuaGGGCgguggCGCGGCc- -3' miRNA: 3'- -GCGUCUUUa----CGUG--CCUGa----GCGCCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 98237 | 0.69 | 0.908949 |
Target: 5'- gGCGGGGAgGCGgGGGCggcCaCGGCGGg -3' miRNA: 3'- gCGUCUUUaCGUgCCUGa--GcGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 36970 | 0.69 | 0.911273 |
Target: 5'- aGCGGAGcggGUGCucggcggcgacauccGCgacgaGGGCgUCGCGGCGGa -3' miRNA: 3'- gCGUCUU---UACG---------------UG-----CCUG-AGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 152148 | 0.69 | 0.912994 |
Target: 5'- aGCAGuucgGCGCGGuACUCGCucaugcucagcaucGGCGa -3' miRNA: 3'- gCGUCuuuaCGUGCC-UGAGCG--------------CCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 228975 | 0.69 | 0.914694 |
Target: 5'- cCGaGGAGGUGCGCGGGCggCGCaGGacCGGc -3' miRNA: 3'- -GCgUCUUUACGUGCCUGa-GCG-CC--GCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 104002 | 0.69 | 0.914694 |
Target: 5'- gCGUAGuacAUGCGCacgccGGGgUCGuCGGCGGg -3' miRNA: 3'- -GCGUCuu-UACGUG-----CCUgAGC-GCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 116332 | 0.69 | 0.914694 |
Target: 5'- uGCcaAGAGcUGCugacGCGGACggaccgcgagCGCGGCGGc -3' miRNA: 3'- gCG--UCUUuACG----UGCCUGa---------GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 166919 | 0.68 | 0.918585 |
Target: 5'- gGCAGAGGUagacggggcccacgGCcuuGCGGAuCUCG-GGCGGg -3' miRNA: 3'- gCGUCUUUA--------------CG---UGCCU-GAGCgCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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