miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 120354 0.68 0.919676
Target:  5'- gGCGGAGAcaccuGCGGACgucgcuguauuauUUGCGGCGGa -3'
miRNA:   3'- gCGUCUUUacg--UGCCUG-------------AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 110516 0.68 0.920219
Target:  5'- aGUGGAccugGAUGCGCGGcGC-CGCGGCc- -3'
miRNA:   3'- gCGUCU----UUACGUGCC-UGaGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 118619 0.68 0.920219
Target:  5'- uCGCAGGca-GCAUGGAgUCGCgagGGCGu -3'
miRNA:   3'- -GCGUCUuuaCGUGCCUgAGCG---CCGCc -5'
14086 5' -55.4 NC_003521.1 + 161084 0.68 0.920219
Target:  5'- gCGCuGAugucgGUACGaGugUCgGCGGCGGu -3'
miRNA:   3'- -GCGuCUuua--CGUGC-CugAG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 169440 0.68 0.920219
Target:  5'- aCGCGGAcgAcgGCGuCGG-Cg-GCGGCGGg -3'
miRNA:   3'- -GCGUCU--UuaCGU-GCCuGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 113527 0.68 0.920219
Target:  5'- gCGCAGcg--GCugGGAuccCUCGCGcCGGg -3'
miRNA:   3'- -GCGUCuuuaCGugCCU---GAGCGCcGCC- -5'
14086 5' -55.4 NC_003521.1 + 123791 0.68 0.925001
Target:  5'- aCGCAGAgGAUGCcucguucGCGGucCUCGuuGCGGu -3'
miRNA:   3'- -GCGUCU-UUACG-------UGCCu-GAGCgcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 52574 0.68 0.925521
Target:  5'- gGCAGAAGacgucGCGCGGGCa-GCuGGUGGc -3'
miRNA:   3'- gCGUCUUUa----CGUGCCUGagCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 178625 0.68 0.925521
Target:  5'- uGCGGAuuUGCACGuuGCgUCGUuGGCGGu -3'
miRNA:   3'- gCGUCUuuACGUGCc-UG-AGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 240144 0.68 0.925521
Target:  5'- gCGCGGAAA-GCGCuGGCUCaUGGCGu -3'
miRNA:   3'- -GCGUCUUUaCGUGcCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 190533 0.68 0.930601
Target:  5'- aGC-GAGGUGCgGCGGcaGCa-GCGGCGGa -3'
miRNA:   3'- gCGuCUUUACG-UGCC--UGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 34926 0.68 0.930601
Target:  5'- aGCAGuAGcgGCGCaGACccucguagUCGCGGCGc -3'
miRNA:   3'- gCGUC-UUuaCGUGcCUG--------AGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 123416 0.68 0.930601
Target:  5'- aCGCGG----GCACGGcAC-CGaCGGCGGg -3'
miRNA:   3'- -GCGUCuuuaCGUGCC-UGaGC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 239860 0.68 0.930601
Target:  5'- gCGCGGAAGcccauuccucUGCAgCGGACcacguuccagUCGCaGCGGc -3'
miRNA:   3'- -GCGUCUUU----------ACGU-GCCUG----------AGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 93040 0.68 0.934983
Target:  5'- uGCAGGug-GCGCuGGGCUucaacacCGUGGUGGu -3'
miRNA:   3'- gCGUCUuuaCGUG-CCUGA-------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 63230 0.68 0.935459
Target:  5'- aGCGGAAcgGC-CGGAaccgGCGGCGc -3'
miRNA:   3'- gCGUCUUuaCGuGCCUgag-CGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 78112 0.68 0.935459
Target:  5'- aCGCAgcccGAGAUGUACaccuugguGGGCgcguuaGCGGCGGc -3'
miRNA:   3'- -GCGU----CUUUACGUG--------CCUGag----CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 89446 0.68 0.935459
Target:  5'- cCGCAGAAcgGCguuucuaaaaccGCGGA-UCGCGGUc- -3'
miRNA:   3'- -GCGUCUUuaCG------------UGCCUgAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 66279 0.68 0.935459
Target:  5'- aGCAGGAggGagGCGGACUgGCGGgcacagccgaccCGGa -3'
miRNA:   3'- gCGUCUUuaCg-UGCCUGAgCGCC------------GCC- -5'
14086 5' -55.4 NC_003521.1 + 89003 0.68 0.935459
Target:  5'- -aCAGAAAUGcCGCGGGCcccaccggCGCcacGGCGGu -3'
miRNA:   3'- gcGUCUUUAC-GUGCCUGa-------GCG---CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.