miRNA display CGI


Results 121 - 140 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 130946 0.68 0.935459
Target:  5'- cCGUGGAGAUgGCACGcaaGGCcuucacCGCGGUGGg -3'
miRNA:   3'- -GCGUCUUUA-CGUGC---CUGa-----GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 66279 0.68 0.935459
Target:  5'- aGCAGGAggGagGCGGACUgGCGGgcacagccgaccCGGa -3'
miRNA:   3'- gCGUCUUuaCg-UGCCUGAgCGCC------------GCC- -5'
14086 5' -55.4 NC_003521.1 + 63230 0.68 0.935459
Target:  5'- aGCGGAAcgGC-CGGAaccgGCGGCGc -3'
miRNA:   3'- gCGUCUUuaCGuGCCUgag-CGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 163217 0.68 0.939641
Target:  5'- gGCAGuagcuccGGcgGcCugGGACUCGCGGaCGa -3'
miRNA:   3'- gCGUC-------UUuaC-GugCCUGAGCGCC-GCc -5'
14086 5' -55.4 NC_003521.1 + 213059 0.68 0.940095
Target:  5'- aCGCgAGGAGcUGCGCcgucgGGACgacaUCGCGGCGc -3'
miRNA:   3'- -GCG-UCUUU-ACGUG-----CCUG----AGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 216832 0.68 0.940095
Target:  5'- gCGCAGGAGgucGCA---GCcCGCGGCGGa -3'
miRNA:   3'- -GCGUCUUUa--CGUgccUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 191373 0.68 0.940095
Target:  5'- aGCAGAAGcGCGCaGACggCGUGGaGGa -3'
miRNA:   3'- gCGUCUUUaCGUGcCUGa-GCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 111080 0.68 0.940095
Target:  5'- gGCGGcgaaGAcgGCGCGGACgCGCucGGCGu -3'
miRNA:   3'- gCGUC----UUuaCGUGCCUGaGCG--CCGCc -5'
14086 5' -55.4 NC_003521.1 + 166109 0.68 0.940095
Target:  5'- aGCAGGAGaGCAgGGagccGCUgcCGCGGCGc -3'
miRNA:   3'- gCGUCUUUaCGUgCC----UGA--GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 76481 0.68 0.944511
Target:  5'- gGUAGGAGcUGuCGCcgGGACgCGUGGCGGc -3'
miRNA:   3'- gCGUCUUU-AC-GUG--CCUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 140146 0.68 0.944511
Target:  5'- cCGUGGAGAUGCA-GGAggUGgGGUGGu -3'
miRNA:   3'- -GCGUCUUUACGUgCCUgaGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 46400 0.68 0.944511
Target:  5'- uGCGuGggGcGCGCGGGCcaggaaGCGGCGa -3'
miRNA:   3'- gCGU-CuuUaCGUGCCUGag----CGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 103759 0.68 0.944511
Target:  5'- gGCGGAAGacaGCAgGGGC-CG-GGCGGu -3'
miRNA:   3'- gCGUCUUUa--CGUgCCUGaGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 109657 0.68 0.944511
Target:  5'- aCGC-GAGAUGaUGCaGACguaGCGGCGGa -3'
miRNA:   3'- -GCGuCUUUAC-GUGcCUGag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 112958 0.67 0.947886
Target:  5'- cCGCccGAGAUGCGCuacuacaugccGCUCaGCGGCGGg -3'
miRNA:   3'- -GCGu-CUUUACGUGcc---------UGAG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 166841 0.67 0.948708
Target:  5'- aCGguGAGGauacGCagGCGGuggCGCGGCGGg -3'
miRNA:   3'- -GCguCUUUa---CG--UGCCugaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 123199 0.67 0.948708
Target:  5'- gGCGGAAcgacaccggGUcGCugGGACccUCGCuGCGGu -3'
miRNA:   3'- gCGUCUU---------UA-CGugCCUG--AGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 193274 0.67 0.948708
Target:  5'- uGCGGAGcggGUGCcgggACGGGCgucggagucggCGCGGgGGu -3'
miRNA:   3'- gCGUCUU---UACG----UGCCUGa----------GCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 83750 0.67 0.948708
Target:  5'- cCGCGGggGgcCugGGACaggGUGGCGGc -3'
miRNA:   3'- -GCGUCuuUacGugCCUGag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 170121 0.67 0.948708
Target:  5'- uCGUAGcuGUaCGCGGACUCGCaGGacaCGGa -3'
miRNA:   3'- -GCGUCuuUAcGUGCCUGAGCG-CC---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.