Results 81 - 100 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14086 | 5' | -55.4 | NC_003521.1 | + | 129284 | 0.67 | 0.952689 |
Target: 5'- gGUAGAGGcGCcgGCGGuACUUuuugagcgGCGGCGGg -3' miRNA: 3'- gCGUCUUUaCG--UGCC-UGAG--------CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 36800 | 0.67 | 0.952689 |
Target: 5'- uGCGGAGccGCucgcggacgGCGGACUCG-GGCa- -3' miRNA: 3'- gCGUCUUuaCG---------UGCCUGAGCgCCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 208929 | 0.67 | 0.952689 |
Target: 5'- cCGCAGuuccuGUGcCGCGGcCUgGCGGUGcGg -3' miRNA: 3'- -GCGUCuu---UAC-GUGCCuGAgCGCCGC-C- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 177458 | 0.67 | 0.952689 |
Target: 5'- cCGUAGAAGcUGCugACGGuCUgCGCGGCcguGGa -3' miRNA: 3'- -GCGUCUUU-ACG--UGCCuGA-GCGCCG---CC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 83750 | 0.67 | 0.948708 |
Target: 5'- cCGCGGggGgcCugGGACaggGUGGCGGc -3' miRNA: 3'- -GCGUCuuUacGugCCUGag-CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 11565 | 0.67 | 0.948708 |
Target: 5'- gCGCcGucGUGCGcCGGACUCuGCGG-GGu -3' miRNA: 3'- -GCGuCuuUACGU-GCCUGAG-CGCCgCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123199 | 0.67 | 0.948708 |
Target: 5'- gGCGGAAcgacaccggGUcGCugGGACccUCGCuGCGGu -3' miRNA: 3'- gCGUCUU---------UA-CGugCCUG--AGCGcCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 193274 | 0.67 | 0.948708 |
Target: 5'- uGCGGAGcggGUGCcgggACGGGCgucggagucggCGCGGgGGu -3' miRNA: 3'- gCGUCUU---UACG----UGCCUGa----------GCGCCgCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 166841 | 0.67 | 0.948708 |
Target: 5'- aCGguGAGGauacGCagGCGGuggCGCGGCGGg -3' miRNA: 3'- -GCguCUUUa---CG--UGCCugaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 170121 | 0.67 | 0.948708 |
Target: 5'- uCGUAGcuGUaCGCGGACUCGCaGGacaCGGa -3' miRNA: 3'- -GCGUCuuUAcGUGCCUGAGCG-CC---GCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 34511 | 0.67 | 0.948708 |
Target: 5'- gCGCAGGuaGcgGcCGCGGGCcgagacgCGCGaGCGGc -3' miRNA: 3'- -GCGUCU--UuaC-GUGCCUGa------GCGC-CGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 112958 | 0.67 | 0.947886 |
Target: 5'- cCGCccGAGAUGCGCuacuacaugccGCUCaGCGGCGGg -3' miRNA: 3'- -GCGu-CUUUACGUGcc---------UGAG-CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 103759 | 0.68 | 0.944511 |
Target: 5'- gGCGGAAGacaGCAgGGGC-CG-GGCGGu -3' miRNA: 3'- gCGUCUUUa--CGUgCCUGaGCgCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 109657 | 0.68 | 0.944511 |
Target: 5'- aCGC-GAGAUGaUGCaGACguaGCGGCGGa -3' miRNA: 3'- -GCGuCUUUAC-GUGcCUGag-CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 46400 | 0.68 | 0.944511 |
Target: 5'- uGCGuGggGcGCGCGGGCcaggaaGCGGCGa -3' miRNA: 3'- gCGU-CuuUaCGUGCCUGag----CGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 76481 | 0.68 | 0.944511 |
Target: 5'- gGUAGGAGcUGuCGCcgGGACgCGUGGCGGc -3' miRNA: 3'- gCGUCUUU-AC-GUG--CCUGaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 140146 | 0.68 | 0.944511 |
Target: 5'- cCGUGGAGAUGCA-GGAggUGgGGUGGu -3' miRNA: 3'- -GCGUCUUUACGUgCCUgaGCgCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 111080 | 0.68 | 0.940095 |
Target: 5'- gGCGGcgaaGAcgGCGCGGACgCGCucGGCGu -3' miRNA: 3'- gCGUC----UUuaCGUGCCUGaGCG--CCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 166109 | 0.68 | 0.940095 |
Target: 5'- aGCAGGAGaGCAgGGagccGCUgcCGCGGCGc -3' miRNA: 3'- gCGUCUUUaCGUgCC----UGA--GCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 191373 | 0.68 | 0.940095 |
Target: 5'- aGCAGAAGcGCGCaGACggCGUGGaGGa -3' miRNA: 3'- gCGUCUUUaCGUGcCUGa-GCGCCgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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