Results 101 - 120 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14086 | 5' | -55.4 | NC_003521.1 | + | 191373 | 0.68 | 0.940095 |
Target: 5'- aGCAGAAGcGCGCaGACggCGUGGaGGa -3' miRNA: 3'- gCGUCUUUaCGUGcCUGa-GCGCCgCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 213059 | 0.68 | 0.940095 |
Target: 5'- aCGCgAGGAGcUGCGCcgucgGGACgacaUCGCGGCGc -3' miRNA: 3'- -GCG-UCUUU-ACGUG-----CCUG----AGCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 163217 | 0.68 | 0.939641 |
Target: 5'- gGCAGuagcuccGGcgGcCugGGACUCGCGGaCGa -3' miRNA: 3'- gCGUC-------UUuaC-GugCCUGAGCGCC-GCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 197456 | 0.68 | 0.935459 |
Target: 5'- gCGcCAGcgcAUGCucugGCGGAUguucacgCGCGGCGGg -3' miRNA: 3'- -GC-GUCuu-UACG----UGCCUGa------GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 130946 | 0.68 | 0.935459 |
Target: 5'- cCGUGGAGAUgGCACGcaaGGCcuucacCGCGGUGGg -3' miRNA: 3'- -GCGUCUUUA-CGUGC---CUGa-----GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 89003 | 0.68 | 0.935459 |
Target: 5'- -aCAGAAAUGcCGCGGGCcccaccggCGCcacGGCGGu -3' miRNA: 3'- gcGUCUUUAC-GUGCCUGa-------GCG---CCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 198363 | 0.68 | 0.935459 |
Target: 5'- uCGagaAGAAGUaGCGcCGGACggcgUUGUGGCGGg -3' miRNA: 3'- -GCg--UCUUUA-CGU-GCCUG----AGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 78112 | 0.68 | 0.935459 |
Target: 5'- aCGCAgcccGAGAUGUACaccuugguGGGCgcguuaGCGGCGGc -3' miRNA: 3'- -GCGU----CUUUACGUG--------CCUGag----CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 63230 | 0.68 | 0.935459 |
Target: 5'- aGCGGAAcgGC-CGGAaccgGCGGCGc -3' miRNA: 3'- gCGUCUUuaCGuGCCUgag-CGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 66279 | 0.68 | 0.935459 |
Target: 5'- aGCAGGAggGagGCGGACUgGCGGgcacagccgaccCGGa -3' miRNA: 3'- gCGUCUUuaCg-UGCCUGAgCGCC------------GCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 89446 | 0.68 | 0.935459 |
Target: 5'- cCGCAGAAcgGCguuucuaaaaccGCGGA-UCGCGGUc- -3' miRNA: 3'- -GCGUCUUuaCG------------UGCCUgAGCGCCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 93040 | 0.68 | 0.934983 |
Target: 5'- uGCAGGug-GCGCuGGGCUucaacacCGUGGUGGu -3' miRNA: 3'- gCGUCUuuaCGUG-CCUGA-------GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123416 | 0.68 | 0.930601 |
Target: 5'- aCGCGG----GCACGGcAC-CGaCGGCGGg -3' miRNA: 3'- -GCGUCuuuaCGUGCC-UGaGC-GCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 190533 | 0.68 | 0.930601 |
Target: 5'- aGC-GAGGUGCgGCGGcaGCa-GCGGCGGa -3' miRNA: 3'- gCGuCUUUACG-UGCC--UGagCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 239860 | 0.68 | 0.930601 |
Target: 5'- gCGCGGAAGcccauuccucUGCAgCGGACcacguuccagUCGCaGCGGc -3' miRNA: 3'- -GCGUCUUU----------ACGU-GCCUG----------AGCGcCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 34926 | 0.68 | 0.930601 |
Target: 5'- aGCAGuAGcgGCGCaGACccucguagUCGCGGCGc -3' miRNA: 3'- gCGUC-UUuaCGUGcCUG--------AGCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 240144 | 0.68 | 0.925521 |
Target: 5'- gCGCGGAAA-GCGCuGGCUCaUGGCGu -3' miRNA: 3'- -GCGUCUUUaCGUGcCUGAGcGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 178625 | 0.68 | 0.925521 |
Target: 5'- uGCGGAuuUGCACGuuGCgUCGUuGGCGGu -3' miRNA: 3'- gCGUCUuuACGUGCc-UG-AGCG-CCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 52574 | 0.68 | 0.925521 |
Target: 5'- gGCAGAAGacgucGCGCGGGCa-GCuGGUGGc -3' miRNA: 3'- gCGUCUUUa----CGUGCCUGagCG-CCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123791 | 0.68 | 0.925001 |
Target: 5'- aCGCAGAgGAUGCcucguucGCGGucCUCGuuGCGGu -3' miRNA: 3'- -GCGUCU-UUACG-------UGCCu-GAGCgcCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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