miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 70259 0.66 0.977215
Target:  5'- uGguGggGUgcaGCACGGGCaggCGCaGGuCGGc -3'
miRNA:   3'- gCguCuuUA---CGUGCCUGa--GCG-CC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 71275 0.69 0.896802
Target:  5'- gGCGGAg--GCGgGGGC-CGCGGCa- -3'
miRNA:   3'- gCGUCUuuaCGUgCCUGaGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 73125 0.66 0.974816
Target:  5'- -aCGGAGGUGCugcacgGCGGGggCaGCGGCGGc -3'
miRNA:   3'- gcGUCUUUACG------UGCCUgaG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 76481 0.68 0.944511
Target:  5'- gGUAGGAGcUGuCGCcgGGACgCGUGGCGGc -3'
miRNA:   3'- gCGUCUUU-AC-GUG--CCUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 76967 0.7 0.855335
Target:  5'- uCGCGGccGAUGCGCGuGauGCUgGCGGCGa -3'
miRNA:   3'- -GCGUCu-UUACGUGC-C--UGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 77094 0.69 0.890405
Target:  5'- uGCGGc---GCAUGGGgUCGCGGCa- -3'
miRNA:   3'- gCGUCuuuaCGUGCCUgAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 77696 0.66 0.972237
Target:  5'- gGCAGAcaGAUGCcCGaGGag-GCGGCGGu -3'
miRNA:   3'- gCGUCU--UUACGuGC-CUgagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 78112 0.68 0.935459
Target:  5'- aCGCAgcccGAGAUGUACaccuugguGGGCgcguuaGCGGCGGc -3'
miRNA:   3'- -GCGU----CUUUACGUG--------CCUGag----CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 78201 0.69 0.896802
Target:  5'- uGCGGAGcggGCGCGGcGCUCGuCGGaGGc -3'
miRNA:   3'- gCGUCUUua-CGUGCC-UGAGC-GCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 78525 0.72 0.753655
Target:  5'- aCGCGGAuuc-CGCGGACUCcCGGCGu -3'
miRNA:   3'- -GCGUCUuuacGUGCCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 78608 0.73 0.70627
Target:  5'- aGCGGAGAgGCACcGACUgCGCGGCu- -3'
miRNA:   3'- gCGUCUUUaCGUGcCUGA-GCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 83585 0.71 0.839955
Target:  5'- uGCucu--UGguCGGAcCUCGCGGCGGc -3'
miRNA:   3'- gCGucuuuACguGCCU-GAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 83750 0.67 0.948708
Target:  5'- cCGCGGggGgcCugGGACaggGUGGCGGc -3'
miRNA:   3'- -GCGUCuuUacGugCCUGag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 84730 0.66 0.975797
Target:  5'- aCGCGGgcAcugccgucgucgucuUGCuCGGGCgcgGCGGCGGc -3'
miRNA:   3'- -GCGUCuuU---------------ACGuGCCUGag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 85859 0.74 0.667261
Target:  5'- aCGCAGAuGAUGCAgGGcaccaggcGCUCGCGGUa- -3'
miRNA:   3'- -GCGUCU-UUACGUgCC--------UGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 87374 0.66 0.966518
Target:  5'- gGCcGAGGUGgA-GGACgagGCGGCGGa -3'
miRNA:   3'- gCGuCUUUACgUgCCUGag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 88034 0.72 0.79855
Target:  5'- uGCAGcuugagcucguuGAGcGCGCGGAUgaggUCGCGGUGGu -3'
miRNA:   3'- gCGUC------------UUUaCGUGCCUG----AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 88500 0.67 0.963367
Target:  5'- gGUAGAGcgGCACGcgcagcGACUCGCagccgugcaGGCGc -3'
miRNA:   3'- gCGUCUUuaCGUGC------CUGAGCG---------CCGCc -5'
14086 5' -55.4 NC_003521.1 + 89003 0.68 0.935459
Target:  5'- -aCAGAAAUGcCGCGGGCcccaccggCGCcacGGCGGu -3'
miRNA:   3'- gcGUCUUUAC-GUGCCUGa-------GCG---CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 89446 0.68 0.935459
Target:  5'- cCGCAGAAcgGCguuucuaaaaccGCGGA-UCGCGGUc- -3'
miRNA:   3'- -GCGUCUUuaCG------------UGCCUgAGCGCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.