miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 91928 0.72 0.752729
Target:  5'- gGCGGcGAUGCgguggacccggcgGCGGACccCGUGGCGGc -3'
miRNA:   3'- gCGUCuUUACG-------------UGCCUGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 92005 0.7 0.855335
Target:  5'- aGCGGGAGcggcgagGCGCGGcgGCg-GCGGCGGu -3'
miRNA:   3'- gCGUCUUUa------CGUGCC--UGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 93040 0.68 0.934983
Target:  5'- uGCAGGug-GCGCuGGGCUucaacacCGUGGUGGu -3'
miRNA:   3'- gCGUCUuuaCGUG-CCUGA-------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 97609 0.71 0.814747
Target:  5'- aGCAGGugcAGUGCACGucgucgugcucaGGCucgacguUCGCGGCGGc -3'
miRNA:   3'- gCGUCU---UUACGUGC------------CUG-------AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 98237 0.69 0.908949
Target:  5'- gGCGGGGAgGCGgGGGCggcCaCGGCGGg -3'
miRNA:   3'- gCGUCUUUaCGUgCCUGa--GcGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 98463 0.66 0.977215
Target:  5'- uGgAGGAGgcgGCgGCGG-C-CGCGGCGGc -3'
miRNA:   3'- gCgUCUUUa--CG-UGCCuGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 99665 0.69 0.908949
Target:  5'- aCGUAGGccauggcccGGUGCACGGGgUUGCcgaaggucucgGGCGGc -3'
miRNA:   3'- -GCGUCU---------UUACGUGCCUgAGCG-----------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 99713 0.72 0.78982
Target:  5'- gCGCAGAAGcUGCGCGGGC-CGCaGUa- -3'
miRNA:   3'- -GCGUCUUU-ACGUGCCUGaGCGcCGcc -5'
14086 5' -55.4 NC_003521.1 + 100075 0.66 0.97329
Target:  5'- gGCAcGGAGgcggGCGCcucgaccgccgacgaGGACUCGC-GCGGg -3'
miRNA:   3'- gCGU-CUUUa---CGUG---------------CCUGAGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 101485 0.66 0.969473
Target:  5'- gCGCGuGAGGUGCuCGaGCa-GCGGCGGc -3'
miRNA:   3'- -GCGU-CUUUACGuGCcUGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 101694 0.66 0.974816
Target:  5'- gGCAGAucuuguccUGUACGcucagcacGAUgCGCGGCGGg -3'
miRNA:   3'- gCGUCUuu------ACGUGC--------CUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 102775 0.66 0.974816
Target:  5'- gGCAGcgGcUGCGCGauGACgCGCcGGCGGc -3'
miRNA:   3'- gCGUCuuU-ACGUGC--CUGaGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 103059 0.66 0.980078
Target:  5'- uGCAGAcagggcgGGUGCGCGGGCgagggcugcUGCuggggaugcgaagggGGCGGa -3'
miRNA:   3'- gCGUCU-------UUACGUGCCUGa--------GCG---------------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 103316 0.69 0.896802
Target:  5'- aCGCGGcgcUGCACGucccaGAcCUCGCGGCGc -3'
miRNA:   3'- -GCGUCuuuACGUGC-----CU-GAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 103581 0.67 0.956457
Target:  5'- gCGCAGAAGcugcGCACGuACUCcuccaCGGUGGg -3'
miRNA:   3'- -GCGUCUUUa---CGUGCcUGAGc----GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 103759 0.68 0.944511
Target:  5'- gGCGGAAGacaGCAgGGGC-CG-GGCGGu -3'
miRNA:   3'- gCGUCUUUa--CGUgCCUGaGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 104002 0.69 0.914694
Target:  5'- gCGUAGuacAUGCGCacgccGGGgUCGuCGGCGGg -3'
miRNA:   3'- -GCGUCuu-UACGUG-----CCUgAGC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 104098 0.66 0.974816
Target:  5'- aCGCGGAAGgcgGCGCGcugccagucCUCGgCGGCGu -3'
miRNA:   3'- -GCGUCUUUa--CGUGCcu-------GAGC-GCCGCc -5'
14086 5' -55.4 NC_003521.1 + 107436 0.7 0.883797
Target:  5'- aCGC-GAAA-GCGCGGAC-CGCcgcgcugugccGGCGGa -3'
miRNA:   3'- -GCGuCUUUaCGUGCCUGaGCG-----------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 109657 0.68 0.944511
Target:  5'- aCGC-GAGAUGaUGCaGACguaGCGGCGGa -3'
miRNA:   3'- -GCGuCUUUAC-GUGcCUGag-CGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.