miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 110010 0.66 0.974816
Target:  5'- gGCGGGAgauGUGCACccggcucucguGGGCgCGCuGCGGu -3'
miRNA:   3'- gCGUCUU---UACGUG-----------CCUGaGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 110322 0.72 0.753655
Target:  5'- cCGCAGGGccaucAUGaCGCGGccgcGCUCGCGGUGu -3'
miRNA:   3'- -GCGUCUU-----UAC-GUGCC----UGAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 110516 0.68 0.920219
Target:  5'- aGUGGAccugGAUGCGCGGcGC-CGCGGCc- -3'
miRNA:   3'- gCGUCU----UUACGUGCC-UGaGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 111080 0.68 0.940095
Target:  5'- gGCGGcgaaGAcgGCGCGGACgCGCucGGCGu -3'
miRNA:   3'- gCGUC----UUuaCGUGCCUGaGCG--CCGCc -5'
14086 5' -55.4 NC_003521.1 + 111240 0.71 0.831998
Target:  5'- uCGCGGccg-GCGCGG---CGCGGCGGa -3'
miRNA:   3'- -GCGUCuuuaCGUGCCugaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 111478 0.69 0.901152
Target:  5'- cCGCcuGGAGuggGUcuacuuccugaccaGCGGGCUgGCGGCGGc -3'
miRNA:   3'- -GCG--UCUUua-CG--------------UGCCUGAgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 112958 0.67 0.947886
Target:  5'- cCGCccGAGAUGCGCuacuacaugccGCUCaGCGGCGGg -3'
miRNA:   3'- -GCGu-CUUUACGUGcc---------UGAG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 113527 0.68 0.920219
Target:  5'- gCGCAGcg--GCugGGAuccCUCGCGcCGGg -3'
miRNA:   3'- -GCGUCuuuaCGugCCU---GAGCGCcGCC- -5'
14086 5' -55.4 NC_003521.1 + 113854 0.72 0.79855
Target:  5'- gGCGGccggcgacGAcgGCGCGGGUUcCGCGGCGGc -3'
miRNA:   3'- gCGUC--------UUuaCGUGCCUGA-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 114828 0.7 0.869963
Target:  5'- gGCGGccacGGUGCACGGACagaaGGCGGu -3'
miRNA:   3'- gCGUCu---UUACGUGCCUGagcgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 115438 0.66 0.974816
Target:  5'- gCGCGGggGUG-ACGGugguugUGCGGaCGGu -3'
miRNA:   3'- -GCGUCuuUACgUGCCuga---GCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 116332 0.69 0.914694
Target:  5'- uGCcaAGAGcUGCugacGCGGACggaccgcgagCGCGGCGGc -3'
miRNA:   3'- gCG--UCUUuACG----UGCCUGa---------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 116877 0.74 0.696585
Target:  5'- gCGCAGug--GCGCGG-CU-GCGGCGGc -3'
miRNA:   3'- -GCGUCuuuaCGUGCCuGAgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 117212 0.7 0.869963
Target:  5'- gGUGGAGAUGUcgcacccgcugACGG-C-CGCGGCGGc -3'
miRNA:   3'- gCGUCUUUACG-----------UGCCuGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 117310 0.66 0.979443
Target:  5'- aCGCGGAu---UGCGGGCggcaGCGGCGa -3'
miRNA:   3'- -GCGUCUuuacGUGCCUGag--CGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 117932 0.66 0.974816
Target:  5'- gCGCAGGAcgGgGgaggaGGAgagcaucaUCGCGGCGGc -3'
miRNA:   3'- -GCGUCUUuaCgUg----CCUg-------AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 118619 0.68 0.920219
Target:  5'- uCGCAGGca-GCAUGGAgUCGCgagGGCGu -3'
miRNA:   3'- -GCGUCUuuaCGUGCCUgAGCG---CCGCc -5'
14086 5' -55.4 NC_003521.1 + 118728 0.66 0.979656
Target:  5'- gCGCGGcaccgGCACGGGCUgcagguugcuggugaGuCGGCGGc -3'
miRNA:   3'- -GCGUCuuua-CGUGCCUGAg--------------C-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 120354 0.68 0.919676
Target:  5'- gGCGGAGAcaccuGCGGACgucgcuguauuauUUGCGGCGGa -3'
miRNA:   3'- gCGUCUUUacg--UGCCUG-------------AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 121768 0.66 0.974816
Target:  5'- gGUGGAugauGGUGUcggccACGGGCagGUGGCGGu -3'
miRNA:   3'- gCGUCU----UUACG-----UGCCUGagCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.