Results 121 - 140 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14086 | 5' | -55.4 | NC_003521.1 | + | 122495 | 0.7 | 0.855335 |
Target: 5'- gGCGGGuucUGCA-GGGCcaaCGCGGCGGc -3' miRNA: 3'- gCGUCUuu-ACGUgCCUGa--GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 122673 | 0.66 | 0.978792 |
Target: 5'- gCGguGggGUGgcgucgccggugauCAUGGGCgUCuCGGCGGg -3' miRNA: 3'- -GCguCuuUAC--------------GUGCCUG-AGcGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123052 | 0.67 | 0.959319 |
Target: 5'- cCGCcaccaugcUGCugGGACggcgGCGGCGGa -3' miRNA: 3'- -GCGucuuu---ACGugCCUGag--CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123169 | 0.66 | 0.979443 |
Target: 5'- uGCuGAGGUG-GCGG-Cg-GCGGCGGg -3' miRNA: 3'- gCGuCUUUACgUGCCuGagCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123199 | 0.67 | 0.948708 |
Target: 5'- gGCGGAAcgacaccggGUcGCugGGACccUCGCuGCGGu -3' miRNA: 3'- gCGUCUU---------UA-CGugCCUG--AGCGcCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123416 | 0.68 | 0.930601 |
Target: 5'- aCGCGG----GCACGGcAC-CGaCGGCGGg -3' miRNA: 3'- -GCGUCuuuaCGUGCC-UGaGC-GCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123698 | 0.66 | 0.974816 |
Target: 5'- gCGguGGAAgaggagGCgGCGG-CUgaGCGGCGGa -3' miRNA: 3'- -GCguCUUUa-----CG-UGCCuGAg-CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123791 | 0.68 | 0.925001 |
Target: 5'- aCGCAGAgGAUGCcucguucGCGGucCUCGuuGCGGu -3' miRNA: 3'- -GCGUCU-UUACG-------UGCCu-GAGCgcCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 124440 | 0.74 | 0.68685 |
Target: 5'- gGCgAGAcGUGguUGGGC-CGCGGCGGc -3' miRNA: 3'- gCG-UCUuUACguGCCUGaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 125836 | 0.7 | 0.869963 |
Target: 5'- --------cGCGuCGGGCUCGCGGUGGu -3' miRNA: 3'- gcgucuuuaCGU-GCCUGAGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 126291 | 0.66 | 0.966518 |
Target: 5'- aGCGGAAAUcgAUGGuGCcCGUGGCGGc -3' miRNA: 3'- gCGUCUUUAcgUGCC-UGaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 128938 | 0.69 | 0.896802 |
Target: 5'- gCGCGGAAG-GUACguccgaacgagGGGCUgGCGGCGu -3' miRNA: 3'- -GCGUCUUUaCGUG-----------CCUGAgCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 129173 | 0.67 | 0.952689 |
Target: 5'- aGCAGAcggcGUGCgGCGGuuuggguUUCGCcGGCGGu -3' miRNA: 3'- gCGUCUu---UACG-UGCCu------GAGCG-CCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 129284 | 0.67 | 0.952689 |
Target: 5'- gGUAGAGGcGCcgGCGGuACUUuuugagcgGCGGCGGg -3' miRNA: 3'- gCGUCUUUaCG--UGCC-UGAG--------CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 130946 | 0.68 | 0.935459 |
Target: 5'- cCGUGGAGAUgGCACGcaaGGCcuucacCGCGGUGGg -3' miRNA: 3'- -GCGUCUUUA-CGUGC---CUGa-----GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 131085 | 0.75 | 0.598254 |
Target: 5'- cCGCGGcuc-GCGCGGGCUCcggaCGGCGGg -3' miRNA: 3'- -GCGUCuuuaCGUGCCUGAGc---GCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 131740 | 0.67 | 0.956457 |
Target: 5'- uCGCuGGAcGUGCACGGcCUgGaggaccaGGCGGu -3' miRNA: 3'- -GCG-UCUuUACGUGCCuGAgCg------CCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 133359 | 0.73 | 0.715897 |
Target: 5'- aCGUGGAGAUcaGCACGGuccgccggcACagCGCGGCGGu -3' miRNA: 3'- -GCGUCUUUA--CGUGCC---------UGa-GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 133756 | 0.7 | 0.869963 |
Target: 5'- gGCAGGcccgGCGauucCGGGgaCGCGGCGGa -3' miRNA: 3'- gCGUCUuua-CGU----GCCUgaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 133972 | 0.67 | 0.960015 |
Target: 5'- gGCGuccAUGCGCGGACgcuggcCGCGGCc- -3' miRNA: 3'- gCGUcuuUACGUGCCUGa-----GCGCCGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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