miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 186745 0.72 0.788939
Target:  5'- gGC-GAGcccAUGCugGGGCUCGgcggcauCGGCGGa -3'
miRNA:   3'- gCGuCUU---UACGugCCUGAGC-------GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 184341 0.67 0.963367
Target:  5'- cCGCAGuacUGCcucuucggGCGGGCcguggCGCGGCGc -3'
miRNA:   3'- -GCGUCuuuACG--------UGCCUGa----GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 184174 0.66 0.969473
Target:  5'- aGCGGgAGGUGCACcGGCcCGUGGUGc -3'
miRNA:   3'- gCGUC-UUUACGUGcCUGaGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 183899 0.66 0.966518
Target:  5'- gGCcGAGGUGCugGaGGCggugcUGCGGCGc -3'
miRNA:   3'- gCGuCUUUACGugC-CUGa----GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 183784 0.7 0.886466
Target:  5'- gGCAGGAcgaGUGCcUGGGCggcguguucauccgCGUGGCGGc -3'
miRNA:   3'- gCGUCUU---UACGuGCCUGa-------------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 182361 0.67 0.956089
Target:  5'- gGCAGAcccuggucgacguGGUGCGCGGAaagUUCGCccGGCa- -3'
miRNA:   3'- gCGUCU-------------UUACGUGCCU---GAGCG--CCGcc -5'
14086 5' -55.4 NC_003521.1 + 181648 0.66 0.979443
Target:  5'- aGcCAGAAGcgggGCAUGGug-CGCGGgGGa -3'
miRNA:   3'- gC-GUCUUUa---CGUGCCugaGCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 180045 0.66 0.977215
Target:  5'- gGUAGAAAUGgGaagaGGAg--GCGGCGGg -3'
miRNA:   3'- gCGUCUUUACgUg---CCUgagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 178625 0.68 0.925521
Target:  5'- uGCGGAuuUGCACGuuGCgUCGUuGGCGGu -3'
miRNA:   3'- gCGUCUuuACGUGCc-UG-AGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 177754 0.71 0.839955
Target:  5'- gCGCAGc--UGUACGGGgUCGCGGUc- -3'
miRNA:   3'- -GCGUCuuuACGUGCCUgAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 177458 0.67 0.952689
Target:  5'- cCGUAGAAGcUGCugACGGuCUgCGCGGCcguGGa -3'
miRNA:   3'- -GCGUCUUU-ACG--UGCCuGA-GCGCCG---CC- -5'
14086 5' -55.4 NC_003521.1 + 173016 0.72 0.79855
Target:  5'- aCGCGGAugcuuuggaGCACGcGCUCGCcGGUGGg -3'
miRNA:   3'- -GCGUCUuua------CGUGCcUGAGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 171620 0.7 0.862013
Target:  5'- gGCGGGAGUGCcgccgacguCGGguaugucuagcgcGC-CGCGGCGGg -3'
miRNA:   3'- gCGUCUUUACGu--------GCC-------------UGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 170121 0.67 0.948708
Target:  5'- uCGUAGcuGUaCGCGGACUCGCaGGacaCGGa -3'
miRNA:   3'- -GCGUCuuUAcGUGCCUGAGCG-CC---GCC- -5'
14086 5' -55.4 NC_003521.1 + 169440 0.68 0.920219
Target:  5'- aCGCGGAcgAcgGCGuCGG-Cg-GCGGCGGg -3'
miRNA:   3'- -GCGUCU--UuaCGU-GCCuGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 168530 0.66 0.969473
Target:  5'- aGCAG----GCugGcGGCcagCGCGGCGGc -3'
miRNA:   3'- gCGUCuuuaCGugC-CUGa--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 168424 0.72 0.78982
Target:  5'- gGCGGGcg-GCA-GGGC-CGCGGCGGc -3'
miRNA:   3'- gCGUCUuuaCGUgCCUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 167190 0.66 0.974816
Target:  5'- gGCGGAGGccuucUGCuuGGGCUgGCaGGCGc -3'
miRNA:   3'- gCGUCUUU-----ACGugCCUGAgCG-CCGCc -5'
14086 5' -55.4 NC_003521.1 + 166919 0.68 0.918585
Target:  5'- gGCAGAGGUagacggggcccacgGCcuuGCGGAuCUCG-GGCGGg -3'
miRNA:   3'- gCGUCUUUA--------------CG---UGCCU-GAGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 166841 0.67 0.948708
Target:  5'- aCGguGAGGauacGCagGCGGuggCGCGGCGGg -3'
miRNA:   3'- -GCguCUUUa---CG--UGCCugaGCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.