miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 166623 0.69 0.896802
Target:  5'- gGCAGAAGacgGCGuCGGGCcgCGCGcCGGg -3'
miRNA:   3'- gCGUCUUUa--CGU-GCCUGa-GCGCcGCC- -5'
14086 5' -55.4 NC_003521.1 + 166109 0.68 0.940095
Target:  5'- aGCAGGAGaGCAgGGagccGCUgcCGCGGCGc -3'
miRNA:   3'- gCGUCUUUaCGUgCC----UGA--GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 165871 0.73 0.734942
Target:  5'- -cCAGcgGUGCACGuGCUCggGCGGCGGg -3'
miRNA:   3'- gcGUCuuUACGUGCcUGAG--CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 165094 0.66 0.979443
Target:  5'- aGCAcGAAUGCuguugaGGAacaGCGGCGGc -3'
miRNA:   3'- gCGUcUUUACGug----CCUgagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 164743 0.7 0.85383
Target:  5'- gCGCGGGAGggggGCAucgcggucgcCGGGCgaaccauagugaCGCGGCGGg -3'
miRNA:   3'- -GCGUCUUUa---CGU----------GCCUGa-----------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 164202 0.71 0.815584
Target:  5'- gGCGGAAcgGCG-GGGCg-GCGGUGGu -3'
miRNA:   3'- gCGUCUUuaCGUgCCUGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 163370 0.67 0.952689
Target:  5'- gGCGGcAGUGuCACGGGCaccaaCGGCGGc -3'
miRNA:   3'- gCGUCuUUAC-GUGCCUGagc--GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 163217 0.68 0.939641
Target:  5'- gGCAGuagcuccGGcgGcCugGGACUCGCGGaCGa -3'
miRNA:   3'- gCGUC-------UUuaC-GugCCUGAGCGCC-GCc -5'
14086 5' -55.4 NC_003521.1 + 163184 0.66 0.979443
Target:  5'- aGCGGcAGcgGaCACGGuGgUgGCGGCGGc -3'
miRNA:   3'- gCGUC-UUuaC-GUGCC-UgAgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 161084 0.68 0.920219
Target:  5'- gCGCuGAugucgGUACGaGugUCgGCGGCGGu -3'
miRNA:   3'- -GCGuCUuua--CGUGC-CugAG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 160307 0.67 0.964651
Target:  5'- gGCGGugg-GCACGGccaucggagccguggGCggCGCGGUGGc -3'
miRNA:   3'- gCGUCuuuaCGUGCC---------------UGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 157028 0.74 0.667261
Target:  5'- aGCAGGuuucggggGCGCGGuCggaggagCGCGGCGGg -3'
miRNA:   3'- gCGUCUuua-----CGUGCCuGa------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 155647 0.73 0.70627
Target:  5'- aGCAGAAgcgccGUGCugGG--UgGCGGCGGa -3'
miRNA:   3'- gCGUCUU-----UACGugCCugAgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 152148 0.69 0.912994
Target:  5'- aGCAGuucgGCGCGGuACUCGCucaugcucagcaucGGCGa -3'
miRNA:   3'- gCGUCuuuaCGUGCC-UGAGCG--------------CCGCc -5'
14086 5' -55.4 NC_003521.1 + 152007 0.66 0.977215
Target:  5'- aGCgAGAAGUGCAucagguuguCGGGCUucaccaggcCGCaGCGGu -3'
miRNA:   3'- gCG-UCUUUACGU---------GCCUGA---------GCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 150643 0.71 0.807141
Target:  5'- gGCGGGGgcGUGCGCGacgaaggcGGCUCuccgGCGGCGGc -3'
miRNA:   3'- gCGUCUU--UACGUGC--------CUGAG----CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 149058 0.66 0.974816
Target:  5'- uGgGGGGAUGCG-GGACcCGCGG-GGu -3'
miRNA:   3'- gCgUCUUUACGUgCCUGaGCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 148446 0.67 0.960015
Target:  5'- gGCGGAgcgAcgGCAgCGGGCgaGCGGaCGGg -3'
miRNA:   3'- gCGUCU---UuaCGU-GCCUGagCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 148410 0.67 0.963367
Target:  5'- uGCgAGGGAgccaugGUGCGGGCggccgCGCcGGCGGc -3'
miRNA:   3'- gCG-UCUUUa-----CGUGCCUGa----GCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 147389 0.72 0.79855
Target:  5'- -aCGGggGUGCgagaugGCGGAUcgCGUGGCGGu -3'
miRNA:   3'- gcGUCuuUACG------UGCCUGa-GCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.