miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 146518 0.67 0.952689
Target:  5'- cCGCAGAAAcgGCGgcuccaccCGGGuccCUCcgGCGGCGGc -3'
miRNA:   3'- -GCGUCUUUa-CGU--------GCCU---GAG--CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 145570 0.74 0.68685
Target:  5'- uGCAGAAcGUGCugcgGCGGcACgaCGCGGCGGc -3'
miRNA:   3'- gCGUCUU-UACG----UGCC-UGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 140146 0.68 0.944511
Target:  5'- cCGUGGAGAUGCA-GGAggUGgGGUGGu -3'
miRNA:   3'- -GCGUCUUUACGUgCCUgaGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 137475 0.7 0.876982
Target:  5'- aGUGGAAggGCGCcggcGugUCGCGGCGc -3'
miRNA:   3'- gCGUCUUuaCGUGc---CugAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 137301 0.74 0.677073
Target:  5'- uGCGGGug-GCGCGGcuGCUgCGCGGCGa -3'
miRNA:   3'- gCGUCUuuaCGUGCC--UGA-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 136858 1.12 0.003919
Target:  5'- aCGCAGAAAUGCACGGACUCGCGGCGGg -3'
miRNA:   3'- -GCGUCUUUACGUGCCUGAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 133972 0.67 0.960015
Target:  5'- gGCGuccAUGCGCGGACgcuggcCGCGGCc- -3'
miRNA:   3'- gCGUcuuUACGUGCCUGa-----GCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 133756 0.7 0.869963
Target:  5'- gGCAGGcccgGCGauucCGGGgaCGCGGCGGa -3'
miRNA:   3'- gCGUCUuua-CGU----GCCUgaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 133359 0.73 0.715897
Target:  5'- aCGUGGAGAUcaGCACGGuccgccggcACagCGCGGCGGu -3'
miRNA:   3'- -GCGUCUUUA--CGUGCC---------UGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 131740 0.67 0.956457
Target:  5'- uCGCuGGAcGUGCACGGcCUgGaggaccaGGCGGu -3'
miRNA:   3'- -GCG-UCUuUACGUGCCuGAgCg------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 131085 0.75 0.598254
Target:  5'- cCGCGGcuc-GCGCGGGCUCcggaCGGCGGg -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGAGc---GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 130946 0.68 0.935459
Target:  5'- cCGUGGAGAUgGCACGcaaGGCcuucacCGCGGUGGg -3'
miRNA:   3'- -GCGUCUUUA-CGUGC---CUGa-----GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 129284 0.67 0.952689
Target:  5'- gGUAGAGGcGCcgGCGGuACUUuuugagcgGCGGCGGg -3'
miRNA:   3'- gCGUCUUUaCG--UGCC-UGAG--------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 129173 0.67 0.952689
Target:  5'- aGCAGAcggcGUGCgGCGGuuuggguUUCGCcGGCGGu -3'
miRNA:   3'- gCGUCUu---UACG-UGCCu------GAGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 128938 0.69 0.896802
Target:  5'- gCGCGGAAG-GUACguccgaacgagGGGCUgGCGGCGu -3'
miRNA:   3'- -GCGUCUUUaCGUG-----------CCUGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 126291 0.66 0.966518
Target:  5'- aGCGGAAAUcgAUGGuGCcCGUGGCGGc -3'
miRNA:   3'- gCGUCUUUAcgUGCC-UGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 125836 0.7 0.869963
Target:  5'- --------cGCGuCGGGCUCGCGGUGGu -3'
miRNA:   3'- gcgucuuuaCGU-GCCUGAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 124440 0.74 0.68685
Target:  5'- gGCgAGAcGUGguUGGGC-CGCGGCGGc -3'
miRNA:   3'- gCG-UCUuUACguGCCUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 123791 0.68 0.925001
Target:  5'- aCGCAGAgGAUGCcucguucGCGGucCUCGuuGCGGu -3'
miRNA:   3'- -GCGUCU-UUACG-------UGCCu-GAGCgcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 123698 0.66 0.974816
Target:  5'- gCGguGGAAgaggagGCgGCGG-CUgaGCGGCGGa -3'
miRNA:   3'- -GCguCUUUa-----CG-UGCCuGAg-CGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.