Results 101 - 120 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14086 | 5' | -55.4 | NC_003521.1 | + | 123416 | 0.68 | 0.930601 |
Target: 5'- aCGCGG----GCACGGcAC-CGaCGGCGGg -3' miRNA: 3'- -GCGUCuuuaCGUGCC-UGaGC-GCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123199 | 0.67 | 0.948708 |
Target: 5'- gGCGGAAcgacaccggGUcGCugGGACccUCGCuGCGGu -3' miRNA: 3'- gCGUCUU---------UA-CGugCCUG--AGCGcCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123169 | 0.66 | 0.979443 |
Target: 5'- uGCuGAGGUG-GCGG-Cg-GCGGCGGg -3' miRNA: 3'- gCGuCUUUACgUGCCuGagCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 123052 | 0.67 | 0.959319 |
Target: 5'- cCGCcaccaugcUGCugGGACggcgGCGGCGGa -3' miRNA: 3'- -GCGucuuu---ACGugCCUGag--CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 122673 | 0.66 | 0.978792 |
Target: 5'- gCGguGggGUGgcgucgccggugauCAUGGGCgUCuCGGCGGg -3' miRNA: 3'- -GCguCuuUAC--------------GUGCCUG-AGcGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 122495 | 0.7 | 0.855335 |
Target: 5'- gGCGGGuucUGCA-GGGCcaaCGCGGCGGc -3' miRNA: 3'- gCGUCUuu-ACGUgCCUGa--GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 121768 | 0.66 | 0.974816 |
Target: 5'- gGUGGAugauGGUGUcggccACGGGCagGUGGCGGu -3' miRNA: 3'- gCGUCU----UUACG-----UGCCUGagCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 120354 | 0.68 | 0.919676 |
Target: 5'- gGCGGAGAcaccuGCGGACgucgcuguauuauUUGCGGCGGa -3' miRNA: 3'- gCGUCUUUacg--UGCCUG-------------AGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 118728 | 0.66 | 0.979656 |
Target: 5'- gCGCGGcaccgGCACGGGCUgcagguugcuggugaGuCGGCGGc -3' miRNA: 3'- -GCGUCuuua-CGUGCCUGAg--------------C-GCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 118619 | 0.68 | 0.920219 |
Target: 5'- uCGCAGGca-GCAUGGAgUCGCgagGGCGu -3' miRNA: 3'- -GCGUCUuuaCGUGCCUgAGCG---CCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 117932 | 0.66 | 0.974816 |
Target: 5'- gCGCAGGAcgGgGgaggaGGAgagcaucaUCGCGGCGGc -3' miRNA: 3'- -GCGUCUUuaCgUg----CCUg-------AGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 117310 | 0.66 | 0.979443 |
Target: 5'- aCGCGGAu---UGCGGGCggcaGCGGCGa -3' miRNA: 3'- -GCGUCUuuacGUGCCUGag--CGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 117212 | 0.7 | 0.869963 |
Target: 5'- gGUGGAGAUGUcgcacccgcugACGG-C-CGCGGCGGc -3' miRNA: 3'- gCGUCUUUACG-----------UGCCuGaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 116877 | 0.74 | 0.696585 |
Target: 5'- gCGCAGug--GCGCGG-CU-GCGGCGGc -3' miRNA: 3'- -GCGUCuuuaCGUGCCuGAgCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 116332 | 0.69 | 0.914694 |
Target: 5'- uGCcaAGAGcUGCugacGCGGACggaccgcgagCGCGGCGGc -3' miRNA: 3'- gCG--UCUUuACG----UGCCUGa---------GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 115438 | 0.66 | 0.974816 |
Target: 5'- gCGCGGggGUG-ACGGugguugUGCGGaCGGu -3' miRNA: 3'- -GCGUCuuUACgUGCCuga---GCGCC-GCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 114828 | 0.7 | 0.869963 |
Target: 5'- gGCGGccacGGUGCACGGACagaaGGCGGu -3' miRNA: 3'- gCGUCu---UUACGUGCCUGagcgCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 113854 | 0.72 | 0.79855 |
Target: 5'- gGCGGccggcgacGAcgGCGCGGGUUcCGCGGCGGc -3' miRNA: 3'- gCGUC--------UUuaCGUGCCUGA-GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 113527 | 0.68 | 0.920219 |
Target: 5'- gCGCAGcg--GCugGGAuccCUCGCGcCGGg -3' miRNA: 3'- -GCGUCuuuaCGugCCU---GAGCGCcGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 112958 | 0.67 | 0.947886 |
Target: 5'- cCGCccGAGAUGCGCuacuacaugccGCUCaGCGGCGGg -3' miRNA: 3'- -GCGu-CUUUACGUGcc---------UGAG-CGCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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