Results 41 - 60 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14086 | 5' | -55.4 | NC_003521.1 | + | 137301 | 0.74 | 0.677073 |
Target: 5'- uGCGGGug-GCGCGGcuGCUgCGCGGCGa -3' miRNA: 3'- gCGUCUuuaCGUGCC--UGA-GCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 239440 | 0.74 | 0.666278 |
Target: 5'- cCGCAGca--GCGCGGGCUCggggacaGCGGUGGc -3' miRNA: 3'- -GCGUCuuuaCGUGCCUGAG-------CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 131085 | 0.75 | 0.598254 |
Target: 5'- cCGCGGcuc-GCGCGGGCUCcggaCGGCGGg -3' miRNA: 3'- -GCGUCuuuaCGUGCCUGAGc---GCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 43146 | 0.76 | 0.578644 |
Target: 5'- gCGUGGAGGUGCACGcGCUgGUGGCGc -3' miRNA: 3'- -GCGUCUUUACGUGCcUGAgCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 235581 | 0.78 | 0.446777 |
Target: 5'- cCGCGGGAcGUGCgggaggacgagagGCGGACUCG-GGCGGa -3' miRNA: 3'- -GCGUCUU-UACG-------------UGCCUGAGCgCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 240641 | 0.73 | 0.725457 |
Target: 5'- cCGCGGgcGUGCAgGGAggcCgaaGCGGCGGc -3' miRNA: 3'- -GCGUCuuUACGUgCCU---Gag-CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 165871 | 0.73 | 0.734942 |
Target: 5'- -cCAGcgGUGCACGuGCUCggGCGGCGGg -3' miRNA: 3'- gcGUCuuUACGUGCcUGAG--CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 92005 | 0.7 | 0.855335 |
Target: 5'- aGCGGGAGcggcgagGCGCGGcgGCg-GCGGCGGu -3' miRNA: 3'- gCGUCUUUa------CGUGCC--UGagCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 164743 | 0.7 | 0.85383 |
Target: 5'- gCGCGGGAGggggGCAucgcggucgcCGGGCgaaccauagugaCGCGGCGGg -3' miRNA: 3'- -GCGUCUUUa---CGU----------GCCUGa-----------GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 222786 | 0.7 | 0.847736 |
Target: 5'- gCGCAGAGGaacuucUGCACGugguagcgcGGCUCGgUGGUGGa -3' miRNA: 3'- -GCGUCUUU------ACGUGC---------CUGAGC-GCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 221802 | 0.71 | 0.839955 |
Target: 5'- gGCGG----GCAUGGGCUcCGuCGGCGGg -3' miRNA: 3'- gCGUCuuuaCGUGCCUGA-GC-GCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 27244 | 0.71 | 0.839955 |
Target: 5'- gGC-GAGA-GCACGGGCUCGCcgaugauGCGGc -3' miRNA: 3'- gCGuCUUUaCGUGCCUGAGCGc------CGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 209540 | 0.71 | 0.823872 |
Target: 5'- cCGCGGuuAUGCgcccgGCGGGgUgGCGGCGa -3' miRNA: 3'- -GCGUCuuUACG-----UGCCUgAgCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 6383 | 0.71 | 0.815584 |
Target: 5'- uCGCGGAGggGCGCcgcaGCUacCGCGGCGGc -3' miRNA: 3'- -GCGUCUUuaCGUGcc--UGA--GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 192039 | 0.71 | 0.807141 |
Target: 5'- cCGCcGgcGUGCGCGGcagacgcgGCgucCGCGGCGGu -3' miRNA: 3'- -GCGuCuuUACGUGCC--------UGa--GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 150643 | 0.71 | 0.807141 |
Target: 5'- gGCGGGGgcGUGCGCGacgaaggcGGCUCuccgGCGGCGGc -3' miRNA: 3'- gCGUCUU--UACGUGC--------CUGAG----CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 88034 | 0.72 | 0.79855 |
Target: 5'- uGCAGcuugagcucguuGAGcGCGCGGAUgaggUCGCGGUGGu -3' miRNA: 3'- gCGUC------------UUUaCGUGCCUG----AGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 168424 | 0.72 | 0.78982 |
Target: 5'- gGCGGGcg-GCA-GGGC-CGCGGCGGc -3' miRNA: 3'- gCGUCUuuaCGUgCCUGaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 91928 | 0.72 | 0.752729 |
Target: 5'- gGCGGcGAUGCgguggacccggcgGCGGACccCGUGGCGGc -3' miRNA: 3'- gCGUCuUUACG-------------UGCCUGa-GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 40706 | 0.73 | 0.744344 |
Target: 5'- cCGguGAGAUGCACcacaUCGCGGCGc -3' miRNA: 3'- -GCguCUUUACGUGccugAGCGCCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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