miRNA display CGI


Results 61 - 80 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 88034 0.72 0.79855
Target:  5'- uGCAGcuugagcucguuGAGcGCGCGGAUgaggUCGCGGUGGu -3'
miRNA:   3'- gCGUC------------UUUaCGUGCCUG----AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 150643 0.71 0.807141
Target:  5'- gGCGGGGgcGUGCGCGacgaaggcGGCUCuccgGCGGCGGc -3'
miRNA:   3'- gCGUCUU--UACGUGC--------CUGAG----CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 32130 0.7 0.862746
Target:  5'- gGCAGGuagcggGCGCGGuGCaccaaGCGGCGGa -3'
miRNA:   3'- gCGUCUuua---CGUGCC-UGag---CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 228719 0.7 0.862746
Target:  5'- uCGCAGAucAUGUuguCGGGCUgCGUGGUGa -3'
miRNA:   3'- -GCGUCUu-UACGu--GCCUGA-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 37430 0.7 0.867818
Target:  5'- gCGCGGcgccgagccucugaAGGUGaCGCuguGGGCUCGCGcGCGGg -3'
miRNA:   3'- -GCGUC--------------UUUAC-GUG---CCUGAGCGC-CGCC- -5'
14086 5' -55.4 NC_003521.1 + 117212 0.7 0.869963
Target:  5'- gGUGGAGAUGUcgcacccgcugACGG-C-CGCGGCGGc -3'
miRNA:   3'- gCGUCUUUACG-----------UGCCuGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 125836 0.7 0.869963
Target:  5'- --------cGCGuCGGGCUCGCGGUGGu -3'
miRNA:   3'- gcgucuuuaCGU-GCCUGAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 133756 0.7 0.869963
Target:  5'- gGCAGGcccgGCGauucCGGGgaCGCGGCGGa -3'
miRNA:   3'- gCGUCUuua-CGU----GCCUgaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 137475 0.7 0.876982
Target:  5'- aGUGGAAggGCGCcggcGugUCGCGGCGc -3'
miRNA:   3'- gCGUCUUuaCGUGc---CugAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 192342 0.7 0.876982
Target:  5'- cCGuCAGAugGGUGCuCGGuGCUCGCacgGGCGGc -3'
miRNA:   3'- -GC-GUCU--UUACGuGCC-UGAGCG---CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 31161 0.7 0.862746
Target:  5'- gCGCAgcGAGAUGCAacgguaguCGGGgaUGCGGUGGa -3'
miRNA:   3'- -GCGU--CUUUACGU--------GCCUgaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 76967 0.7 0.855335
Target:  5'- uCGCGGccGAUGCGCGuGauGCUgGCGGCGa -3'
miRNA:   3'- -GCGUCu-UUACGUGC-C--UGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 192039 0.71 0.807141
Target:  5'- cCGCcGgcGUGCGCGGcagacgcgGCgucCGCGGCGGu -3'
miRNA:   3'- -GCGuCuuUACGUGCC--------UGa--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 6383 0.71 0.815584
Target:  5'- uCGCGGAGggGCGCcgcaGCUacCGCGGCGGc -3'
miRNA:   3'- -GCGUCUUuaCGUGcc--UGA--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 209540 0.71 0.823872
Target:  5'- cCGCGGuuAUGCgcccgGCGGGgUgGCGGCGa -3'
miRNA:   3'- -GCGUCuuUACG-----UGCCUgAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 27244 0.71 0.839955
Target:  5'- gGC-GAGA-GCACGGGCUCGCcgaugauGCGGc -3'
miRNA:   3'- gCGuCUUUaCGUGCCUGAGCGc------CGCC- -5'
14086 5' -55.4 NC_003521.1 + 221802 0.71 0.839955
Target:  5'- gGCGG----GCAUGGGCUcCGuCGGCGGg -3'
miRNA:   3'- gCGUCuuuaCGUGCCUGA-GC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 222786 0.7 0.847736
Target:  5'- gCGCAGAGGaacuucUGCACGugguagcgcGGCUCGgUGGUGGa -3'
miRNA:   3'- -GCGUCUUU------ACGUGC---------CUGAGC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 164743 0.7 0.85383
Target:  5'- gCGCGGGAGggggGCAucgcggucgcCGGGCgaaccauagugaCGCGGCGGg -3'
miRNA:   3'- -GCGUCUUUa---CGU----------GCCUGa-----------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 92005 0.7 0.855335
Target:  5'- aGCGGGAGcggcgagGCGCGGcgGCg-GCGGCGGu -3'
miRNA:   3'- gCGUCUUUa------CGUGCC--UGagCGCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.