Results 81 - 100 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14086 | 5' | -55.4 | NC_003521.1 | + | 211566 | 0.69 | 0.890405 |
Target: 5'- aGcCAGua--GCGCGcacGCUCGCGGCGGu -3' miRNA: 3'- gC-GUCuuuaCGUGCc--UGAGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 77094 | 0.69 | 0.890405 |
Target: 5'- uGCGGc---GCAUGGGgUCGCGGCa- -3' miRNA: 3'- gCGUCuuuaCGUGCCUgAGCGCCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 35087 | 0.69 | 0.896802 |
Target: 5'- gCGCucGAcAUGC-CGGAUUCGaGGCGGc -3' miRNA: 3'- -GCGu-CUuUACGuGCCUGAGCgCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 43470 | 0.69 | 0.896802 |
Target: 5'- aGCGGGccaGCGCGGcggccgugcugGC-CGCGGCGGc -3' miRNA: 3'- gCGUCUuuaCGUGCC-----------UGaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 71275 | 0.69 | 0.896802 |
Target: 5'- gGCGGAg--GCGgGGGC-CGCGGCa- -3' miRNA: 3'- gCGUCUuuaCGUgCCUGaGCGCCGcc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 236136 | 0.69 | 0.902984 |
Target: 5'- aCGCGGggGUuCACgGGACUugagcaagaUGCGGCGu -3' miRNA: 3'- -GCGUCuuUAcGUG-CCUGA---------GCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 6073 | 0.69 | 0.908949 |
Target: 5'- --aGGGAAUGCgACGGcCggUGCGGCGGc -3' miRNA: 3'- gcgUCUUUACG-UGCCuGa-GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 192342 | 0.7 | 0.876982 |
Target: 5'- cCGuCAGAugGGUGCuCGGuGCUCGCacgGGCGGc -3' miRNA: 3'- -GC-GUCU--UUACGuGCC-UGAGCG---CCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 137475 | 0.7 | 0.876982 |
Target: 5'- aGUGGAAggGCGCcggcGugUCGCGGCGc -3' miRNA: 3'- gCGUCUUuaCGUGc---CugAGCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 133756 | 0.7 | 0.869963 |
Target: 5'- gGCAGGcccgGCGauucCGGGgaCGCGGCGGa -3' miRNA: 3'- gCGUCUuua-CGU----GCCUgaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 164743 | 0.7 | 0.85383 |
Target: 5'- gCGCGGGAGggggGCAucgcggucgcCGGGCgaaccauagugaCGCGGCGGg -3' miRNA: 3'- -GCGUCUUUa---CGU----------GCCUGa-----------GCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 92005 | 0.7 | 0.855335 |
Target: 5'- aGCGGGAGcggcgagGCGCGGcgGCg-GCGGCGGu -3' miRNA: 3'- gCGUCUUUa------CGUGCC--UGagCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 76967 | 0.7 | 0.855335 |
Target: 5'- uCGCGGccGAUGCGCGuGauGCUgGCGGCGa -3' miRNA: 3'- -GCGUCu-UUACGUGC-C--UGAgCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 31161 | 0.7 | 0.862746 |
Target: 5'- gCGCAgcGAGAUGCAacgguaguCGGGgaUGCGGUGGa -3' miRNA: 3'- -GCGU--CUUUACGU--------GCCUgaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 32130 | 0.7 | 0.862746 |
Target: 5'- gGCAGGuagcggGCGCGGuGCaccaaGCGGCGGa -3' miRNA: 3'- gCGUCUuua---CGUGCC-UGag---CGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 228719 | 0.7 | 0.862746 |
Target: 5'- uCGCAGAucAUGUuguCGGGCUgCGUGGUGa -3' miRNA: 3'- -GCGUCUu-UACGu--GCCUGA-GCGCCGCc -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 37430 | 0.7 | 0.867818 |
Target: 5'- gCGCGGcgccgagccucugaAGGUGaCGCuguGGGCUCGCGcGCGGg -3' miRNA: 3'- -GCGUC--------------UUUAC-GUG---CCUGAGCGC-CGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 117212 | 0.7 | 0.869963 |
Target: 5'- gGUGGAGAUGUcgcacccgcugACGG-C-CGCGGCGGc -3' miRNA: 3'- gCGUCUUUACG-----------UGCCuGaGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 125836 | 0.7 | 0.869963 |
Target: 5'- --------cGCGuCGGGCUCGCGGUGGu -3' miRNA: 3'- gcgucuuuaCGU-GCCUGAGCGCCGCC- -5' |
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14086 | 5' | -55.4 | NC_003521.1 | + | 99665 | 0.69 | 0.908949 |
Target: 5'- aCGUAGGccauggcccGGUGCACGGGgUUGCcgaaggucucgGGCGGc -3' miRNA: 3'- -GCGUCU---------UUACGUGCCUgAGCG-----------CCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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