miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 107436 0.7 0.883797
Target:  5'- aCGC-GAAA-GCGCGGAC-CGCcgcgcugugccGGCGGa -3'
miRNA:   3'- -GCGuCUUUaCGUGCCUGaGCG-----------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 164202 0.71 0.815584
Target:  5'- gGCGGAAcgGCG-GGGCg-GCGGUGGu -3'
miRNA:   3'- gCGUCUUuaCGUgCCUGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 157028 0.74 0.667261
Target:  5'- aGCAGGuuucggggGCGCGGuCggaggagCGCGGCGGg -3'
miRNA:   3'- gCGUCUuua-----CGUGCCuGa------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 49667 0.7 0.883797
Target:  5'- uGgAGAGggGC-CGGGCgagCGCGGCGc -3'
miRNA:   3'- gCgUCUUuaCGuGCCUGa--GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 39212 0.74 0.666278
Target:  5'- cCGCAGca--GCGCGGGCUCggggacaGCGGUGGc -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGAG-------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 130946 0.68 0.935459
Target:  5'- cCGUGGAGAUgGCACGcaaGGCcuucacCGCGGUGGg -3'
miRNA:   3'- -GCGUCUUUA-CGUGC---CUGa-----GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 18446 0.74 0.696585
Target:  5'- gCGCGGccuGUGCcgcuucgaccGCGGGCUgCGCGGCGa -3'
miRNA:   3'- -GCGUCuu-UACG----------UGCCUGA-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 239860 0.68 0.930601
Target:  5'- gCGCGGAAGcccauuccucUGCAgCGGACcacguuccagUCGCaGCGGc -3'
miRNA:   3'- -GCGUCUUU----------ACGU-GCCUG----------AGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 161084 0.68 0.920219
Target:  5'- gCGCuGAugucgGUACGaGugUCgGCGGCGGu -3'
miRNA:   3'- -GCGuCUuua--CGUGC-CugAG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 104002 0.69 0.914694
Target:  5'- gCGUAGuacAUGCGCacgccGGGgUCGuCGGCGGg -3'
miRNA:   3'- -GCGUCuu-UACGUG-----CCUgAGC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 212052 0.69 0.908949
Target:  5'- gCGCAGAAAgugcaGCGCuaGGGCgguggCGCGGCc- -3'
miRNA:   3'- -GCGUCUUUa----CGUG--CCUGa----GCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 78201 0.69 0.896802
Target:  5'- uGCGGAGcggGCGCGGcGCUCGuCGGaGGc -3'
miRNA:   3'- gCGUCUUua-CGUGCC-UGAGC-GCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 56784 0.69 0.896802
Target:  5'- aGCuGcuGUGCGCgaGGGCUCGCGaCGGc -3'
miRNA:   3'- gCGuCuuUACGUG--CCUGAGCGCcGCC- -5'
14086 5' -55.4 NC_003521.1 + 114828 0.7 0.869963
Target:  5'- gGCGGccacGGUGCACGGACagaaGGCGGu -3'
miRNA:   3'- gCGUCu---UUACGUGCCUGagcgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 19955 0.7 0.862746
Target:  5'- uGguGAGGUGgC-CGGGCUgGCGGUGa -3'
miRNA:   3'- gCguCUUUAC-GuGCCUGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 187184 0.7 0.847736
Target:  5'- uGCGGAGAcggcccgccUGCAUcggGGACauUCGuCGGCGGa -3'
miRNA:   3'- gCGUCUUU---------ACGUG---CCUG--AGC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 195170 0.71 0.831998
Target:  5'- aGCGGguGUGCGcCGGACcCcgcggagccgGCGGCGGu -3'
miRNA:   3'- gCGUCuuUACGU-GCCUGaG----------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 113854 0.72 0.79855
Target:  5'- gGCGGccggcgacGAcgGCGCGGGUUcCGCGGCGGc -3'
miRNA:   3'- gCGUC--------UUuaCGUGCCUGA-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 186745 0.72 0.788939
Target:  5'- gGC-GAGcccAUGCugGGGCUCGgcggcauCGGCGGa -3'
miRNA:   3'- gCGuCUU---UACGugCCUGAGC-------GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 78525 0.72 0.753655
Target:  5'- aCGCGGAuuc-CGCGGACUCcCGGCGu -3'
miRNA:   3'- -GCGUCUuuacGUGCCUGAGcGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.