miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 56784 0.69 0.896802
Target:  5'- aGCuGcuGUGCGCgaGGGCUCGCGaCGGc -3'
miRNA:   3'- gCGuCuuUACGUG--CCUGAGCGCcGCC- -5'
14086 5' -55.4 NC_003521.1 + 111478 0.69 0.901152
Target:  5'- cCGCcuGGAGuggGUcuacuuccugaccaGCGGGCUgGCGGCGGc -3'
miRNA:   3'- -GCG--UCUUua-CG--------------UGCCUGAgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 78608 0.73 0.70627
Target:  5'- aGCGGAGAgGCACcGACUgCGCGGCu- -3'
miRNA:   3'- gCGUCUUUaCGUGcCUGA-GCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 110322 0.72 0.753655
Target:  5'- cCGCAGGGccaucAUGaCGCGGccgcGCUCGCGGUGu -3'
miRNA:   3'- -GCGUCUU-----UAC-GUGCC----UGAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 99713 0.72 0.78982
Target:  5'- gCGCAGAAGcUGCGCGGGC-CGCaGUa- -3'
miRNA:   3'- -GCGUCUUU-ACGUGCCUGaGCGcCGcc -5'
14086 5' -55.4 NC_003521.1 + 147389 0.72 0.79855
Target:  5'- -aCGGggGUGCgagaugGCGGAUcgCGUGGCGGu -3'
miRNA:   3'- gcGUCuuUACG------UGCCUGa-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 83585 0.71 0.839955
Target:  5'- uGCucu--UGguCGGAcCUCGCGGCGGc -3'
miRNA:   3'- gCGucuuuACguGCCU-GAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 16708 0.7 0.847736
Target:  5'- gGCAGAc--GCGCGuGAUgCGCGGCGa -3'
miRNA:   3'- gCGUCUuuaCGUGC-CUGaGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 7955 0.7 0.869963
Target:  5'- -cCAGAucgcCGCGGugUCGCGGcCGGg -3'
miRNA:   3'- gcGUCUuuacGUGCCugAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 38520 0.7 0.876982
Target:  5'- aGCAGAAGUcggGCcgGCGGAgCUCGacagaGGUGGg -3'
miRNA:   3'- gCGUCUUUA---CG--UGCCU-GAGCg----CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 123052 0.67 0.959319
Target:  5'- cCGCcaccaugcUGCugGGACggcgGCGGCGGa -3'
miRNA:   3'- -GCGucuuu---ACGugCCUGag--CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 29841 0.67 0.956457
Target:  5'- uGCAGA--UGCACGGACUguucaCGCc-CGGg -3'
miRNA:   3'- gCGUCUuuACGUGCCUGA-----GCGccGCC- -5'
14086 5' -55.4 NC_003521.1 + 116332 0.69 0.914694
Target:  5'- uGCcaAGAGcUGCugacGCGGACggaccgcgagCGCGGCGGc -3'
miRNA:   3'- gCG--UCUUuACG----UGCCUGa---------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 120354 0.68 0.919676
Target:  5'- gGCGGAGAcaccuGCGGACgucgcuguauuauUUGCGGCGGa -3'
miRNA:   3'- gCGUCUUUacg--UGCCUG-------------AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 239860 0.68 0.930601
Target:  5'- gCGCGGAAGcccauuccucUGCAgCGGACcacguuccagUCGCaGCGGc -3'
miRNA:   3'- -GCGUCUUU----------ACGU-GCCUG----------AGCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 130946 0.68 0.935459
Target:  5'- cCGUGGAGAUgGCACGcaaGGCcuucacCGCGGUGGg -3'
miRNA:   3'- -GCGUCUUUA-CGUGC---CUGa-----GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 213059 0.68 0.940095
Target:  5'- aCGCgAGGAGcUGCGCcgucgGGACgacaUCGCGGCGc -3'
miRNA:   3'- -GCG-UCUUU-ACGUG-----CCUG----AGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 103759 0.68 0.944511
Target:  5'- gGCGGAAGacaGCAgGGGC-CG-GGCGGu -3'
miRNA:   3'- gCGUCUUUa--CGUgCCUGaGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 36800 0.67 0.952689
Target:  5'- uGCGGAGccGCucgcggacgGCGGACUCG-GGCa- -3'
miRNA:   3'- gCGUCUUuaCG---------UGCCUGAGCgCCGcc -5'
14086 5' -55.4 NC_003521.1 + 129284 0.67 0.952689
Target:  5'- gGUAGAGGcGCcgGCGGuACUUuuugagcgGCGGCGGg -3'
miRNA:   3'- gCGUCUUUaCG--UGCC-UGAG--------CGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.