miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 83585 0.71 0.839955
Target:  5'- uGCucu--UGguCGGAcCUCGCGGCGGc -3'
miRNA:   3'- gCGucuuuACguGCCU-GAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 16708 0.7 0.847736
Target:  5'- gGCAGAc--GCGCGuGAUgCGCGGCGa -3'
miRNA:   3'- gCGUCUuuaCGUGC-CUGaGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 7955 0.7 0.869963
Target:  5'- -cCAGAucgcCGCGGugUCGCGGcCGGg -3'
miRNA:   3'- gcGUCUuuacGUGCCugAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 38520 0.7 0.876982
Target:  5'- aGCAGAAGUcggGCcgGCGGAgCUCGacagaGGUGGg -3'
miRNA:   3'- gCGUCUUUA---CG--UGCCU-GAGCg----CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 128938 0.69 0.896802
Target:  5'- gCGCGGAAG-GUACguccgaacgagGGGCUgGCGGCGu -3'
miRNA:   3'- -GCGUCUUUaCGUG-----------CCUGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 181648 0.66 0.979443
Target:  5'- aGcCAGAAGcgggGCAUGGug-CGCGGgGGa -3'
miRNA:   3'- gC-GUCUUUa---CGUGCCugaGCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 118728 0.66 0.979656
Target:  5'- gCGCGGcaccgGCACGGGCUgcagguugcuggugaGuCGGCGGc -3'
miRNA:   3'- -GCGUCuuua-CGUGCCUGAg--------------C-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 163184 0.66 0.979443
Target:  5'- aGCGGcAGcgGaCACGGuGgUgGCGGCGGc -3'
miRNA:   3'- gCGUC-UUuaC-GUGCC-UgAgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 65703 0.66 0.979443
Target:  5'- gGCaAGAAGgacaGCGGcGC-CGCGGCGGc -3'
miRNA:   3'- gCG-UCUUUacg-UGCC-UGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 187584 0.66 0.979227
Target:  5'- cCGCGGggGcuucgccgGCggucgcuucgcccGCGGACUCcCGGCGa -3'
miRNA:   3'- -GCGUCuuUa-------CG-------------UGCCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 31161 0.7 0.862746
Target:  5'- gCGCAgcGAGAUGCAacgguaguCGGGgaUGCGGUGGa -3'
miRNA:   3'- -GCGU--CUUUACGU--------GCCUgaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 76967 0.7 0.855335
Target:  5'- uCGCGGccGAUGCGCGuGauGCUgGCGGCGa -3'
miRNA:   3'- -GCGUCu-UUACGUGC-C--UGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 240144 0.68 0.925521
Target:  5'- gCGCGGAAA-GCGCuGGCUCaUGGCGu -3'
miRNA:   3'- -GCGUCUUUaCGUGcCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 34926 0.68 0.930601
Target:  5'- aGCAGuAGcgGCGCaGACccucguagUCGCGGCGc -3'
miRNA:   3'- gCGUC-UUuaCGUGcCUG--------AGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 63230 0.68 0.935459
Target:  5'- aGCGGAAcgGC-CGGAaccgGCGGCGc -3'
miRNA:   3'- gCGUCUUuaCGuGCCUgag-CGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 92005 0.7 0.855335
Target:  5'- aGCGGGAGcggcgagGCGCGGcgGCg-GCGGCGGu -3'
miRNA:   3'- gCGUCUUUa------CGUGCC--UGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 78112 0.68 0.935459
Target:  5'- aCGCAgcccGAGAUGUACaccuugguGGGCgcguuaGCGGCGGc -3'
miRNA:   3'- -GCGU----CUUUACGUG--------CCUGag----CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 89003 0.68 0.935459
Target:  5'- -aCAGAAAUGcCGCGGGCcccaccggCGCcacGGCGGu -3'
miRNA:   3'- gcGUCUUUAC-GUGCCUGa-------GCG---CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 240641 0.73 0.725457
Target:  5'- cCGCGGgcGUGCAgGGAggcCgaaGCGGCGGc -3'
miRNA:   3'- -GCGUCuuUACGUgCCU---Gag-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 66279 0.68 0.935459
Target:  5'- aGCAGGAggGagGCGGACUgGCGGgcacagccgaccCGGa -3'
miRNA:   3'- gCGUCUUuaCg-UGCCUGAgCGCC------------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.