miRNA display CGI


Results 121 - 140 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 123791 0.68 0.925001
Target:  5'- aCGCAGAgGAUGCcucguucGCGGucCUCGuuGCGGu -3'
miRNA:   3'- -GCGUCU-UUACG-------UGCCu-GAGCgcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 52574 0.68 0.925521
Target:  5'- gGCAGAAGacgucGCGCGGGCa-GCuGGUGGc -3'
miRNA:   3'- gCGUCUUUa----CGUGCCUGagCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 178625 0.68 0.925521
Target:  5'- uGCGGAuuUGCACGuuGCgUCGUuGGCGGu -3'
miRNA:   3'- gCGUCUuuACGUGCc-UG-AGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 240144 0.68 0.925521
Target:  5'- gCGCGGAAA-GCGCuGGCUCaUGGCGu -3'
miRNA:   3'- -GCGUCUUUaCGUGcCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 34926 0.68 0.930601
Target:  5'- aGCAGuAGcgGCGCaGACccucguagUCGCGGCGc -3'
miRNA:   3'- gCGUC-UUuaCGUGcCUG--------AGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 63230 0.68 0.935459
Target:  5'- aGCGGAAcgGC-CGGAaccgGCGGCGc -3'
miRNA:   3'- gCGUCUUuaCGuGCCUgag-CGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 89003 0.68 0.935459
Target:  5'- -aCAGAAAUGcCGCGGGCcccaccggCGCcacGGCGGu -3'
miRNA:   3'- gcGUCUUUAC-GUGCCUGa-------GCG---CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 92005 0.7 0.855335
Target:  5'- aGCGGGAGcggcgagGCGCGGcgGCg-GCGGCGGu -3'
miRNA:   3'- gCGUCUUUa------CGUGCC--UGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 164743 0.7 0.85383
Target:  5'- gCGCGGGAGggggGCAucgcggucgcCGGGCgaaccauagugaCGCGGCGGg -3'
miRNA:   3'- -GCGUCUUUa---CGU----------GCCUGa-----------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 180045 0.66 0.977215
Target:  5'- gGUAGAAAUGgGaagaGGAg--GCGGCGGg -3'
miRNA:   3'- gCGUCUUUACgUg---CCUgagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 70259 0.66 0.977215
Target:  5'- uGguGggGUgcaGCACGGGCaggCGCaGGuCGGc -3'
miRNA:   3'- gCguCuuUA---CGUGCCUGa--GCG-CC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 35782 0.66 0.977215
Target:  5'- gCGCAGAcggacgaaacgGAUcCAuCGGGCgUCGCGGCa- -3'
miRNA:   3'- -GCGUCU-----------UUAcGU-GCCUG-AGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 31576 0.66 0.977215
Target:  5'- uCGCGGGAcacgcugGCACGGAUacgggagaugUCGUccaccgucagguGGCGGa -3'
miRNA:   3'- -GCGUCUUua-----CGUGCCUG----------AGCG------------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 152007 0.66 0.977215
Target:  5'- aGCgAGAAGUGCAucagguuguCGGGCUucaccaggcCGCaGCGGu -3'
miRNA:   3'- gCG-UCUUUACGU---------GCCUGA---------GCGcCGCC- -5'
14086 5' -55.4 NC_003521.1 + 226125 0.66 0.976277
Target:  5'- -aCAGGuugGCGCGGAUgccccaccaccaGCGGCGGc -3'
miRNA:   3'- gcGUCUuuaCGUGCCUGag----------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 121768 0.66 0.974816
Target:  5'- gGUGGAugauGGUGUcggccACGGGCagGUGGCGGu -3'
miRNA:   3'- gCGUCU----UUACG-----UGCCUGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 101694 0.66 0.974816
Target:  5'- gGCAGAucuuguccUGUACGcucagcacGAUgCGCGGCGGg -3'
miRNA:   3'- gCGUCUuu------ACGUGC--------CUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 73125 0.66 0.974816
Target:  5'- -aCGGAGGUGCugcacgGCGGGggCaGCGGCGGc -3'
miRNA:   3'- gcGUCUUUACG------UGCCUgaG-CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 228975 0.69 0.914694
Target:  5'- cCGaGGAGGUGCGCGGGCggCGCaGGacCGGc -3'
miRNA:   3'- -GCgUCUUUACGUGCCUGa-GCG-CC--GCC- -5'
14086 5' -55.4 NC_003521.1 + 222786 0.7 0.847736
Target:  5'- gCGCAGAGGaacuucUGCACGugguagcgcGGCUCGgUGGUGGa -3'
miRNA:   3'- -GCGUCUUU------ACGUGC---------CUGAGC-GCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.