miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 5' -52 NC_003521.1 + 135543 1.07 0.015987
Target:  5'- uGAAUCGUCCGCGUUCCCACGGUUUGUc -3'
miRNA:   3'- -CUUAGCAGGCGCAAGGGUGCCAAACA- -5'
14089 5' -52 NC_003521.1 + 50416 0.67 0.990457
Target:  5'- cGAcgCGcUCCGCGgaCUCGCGGUUc-- -3'
miRNA:   3'- -CUuaGC-AGGCGCaaGGGUGCCAAaca -5'
14089 5' -52 NC_003521.1 + 38657 0.67 0.991624
Target:  5'- cGggUCcguuUCCGCG-UCCUGCGGUcUGg -3'
miRNA:   3'- -CuuAGc---AGGCGCaAGGGUGCCAaACa -5'
14089 5' -52 NC_003521.1 + 5243 0.66 0.99521
Target:  5'- --cUCGUccucCCGCacgUCCCGCGGguugUUGUa -3'
miRNA:   3'- cuuAGCA----GGCGca-AGGGUGCCa---AACA- -5'
14089 5' -52 NC_003521.1 + 228123 0.66 0.996982
Target:  5'- ---aCGcUCGCGUUaCCCGCGGUcgUGg -3'
miRNA:   3'- cuuaGCaGGCGCAA-GGGUGCCAa-ACa -5'
14089 5' -52 NC_003521.1 + 160399 0.71 0.926004
Target:  5'- ---gCGUUCGCGUUCCC-CGGUg--- -3'
miRNA:   3'- cuuaGCAGGCGCAAGGGuGCCAaaca -5'
14089 5' -52 NC_003521.1 + 140473 0.71 0.926004
Target:  5'- ---cCGUCCGCGUggcuUCgCCGCGGUUg-- -3'
miRNA:   3'- cuuaGCAGGCGCA----AG-GGUGCCAAaca -5'
14089 5' -52 NC_003521.1 + 79682 0.7 0.961147
Target:  5'- ---aCGUCCGCGaccgCCCGCGGccgcgUUGa -3'
miRNA:   3'- cuuaGCAGGCGCaa--GGGUGCCa----AACa -5'
14089 5' -52 NC_003521.1 + 238884 0.67 0.991624
Target:  5'- cGggUCcguuUCCGCG-UCCUGCGGUcUGg -3'
miRNA:   3'- -CuuAGc---AGGCGCaAGGGUGCCAaACa -5'
14089 5' -52 NC_003521.1 + 11715 0.67 0.994134
Target:  5'- --cUCGUCCGgccucuucgagcaGUUCuaCCACGGUUUGg -3'
miRNA:   3'- cuuAGCAGGCg------------CAAG--GGUGCCAAACa -5'
14089 5' -52 NC_003521.1 + 212254 0.66 0.996982
Target:  5'- ---cCGUCCGCGUagucgguggCCgGCGGUagGUa -3'
miRNA:   3'- cuuaGCAGGCGCAa--------GGgUGCCAaaCA- -5'
14089 5' -52 NC_003521.1 + 222363 0.66 0.997434
Target:  5'- --cUCG-CCGCGcagCCCGCGGUc--- -3'
miRNA:   3'- cuuAGCaGGCGCaa-GGGUGCCAaaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.