miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1409 3' -58.8 NC_001335.1 + 6339 0.66 0.536168
Target:  5'- --uCCAGUCGGUCCUcgaggAUGCCCAucGUGu -3'
miRNA:   3'- ugcGGUCAGCUAGGG-----UGCGGGU--CACc -5'
1409 3' -58.8 NC_001335.1 + 46416 0.66 0.525818
Target:  5'- cCGCCGGcCGAUUCCACgGCCUuGUu- -3'
miRNA:   3'- uGCGGUCaGCUAGGGUG-CGGGuCAcc -5'
1409 3' -58.8 NC_001335.1 + 2549 0.67 0.475327
Target:  5'- -gGCUguGGUCGuUCCCGCGCUUgauGUGGu -3'
miRNA:   3'- ugCGG--UCAGCuAGGGUGCGGGu--CACC- -5'
1409 3' -58.8 NC_001335.1 + 6527 0.67 0.465516
Target:  5'- uCGCCaAGUCGA-CCCAagGCCCgAGcUGGc -3'
miRNA:   3'- uGCGG-UCAGCUaGGGUg-CGGG-UC-ACC- -5'
1409 3' -58.8 NC_001335.1 + 41606 0.69 0.373791
Target:  5'- -aGCCGgccccaggcGUCGAUcCCCACGUggaucugucuCCGGUGGa -3'
miRNA:   3'- ugCGGU---------CAGCUA-GGGUGCG----------GGUCACC- -5'
1409 3' -58.8 NC_001335.1 + 10380 0.69 0.348764
Target:  5'- gACaCCAGgCGcauGUUUCGCGCCCGGUGGc -3'
miRNA:   3'- -UGcGGUCaGC---UAGGGUGCGGGUCACC- -5'
1409 3' -58.8 NC_001335.1 + 29244 0.7 0.309766
Target:  5'- cCGCCAGgacgCGAagcUCCUGCGCCUGGUa- -3'
miRNA:   3'- uGCGGUCa---GCU---AGGGUGCGGGUCAcc -5'
1409 3' -58.8 NC_001335.1 + 29359 0.7 0.309766
Target:  5'- gAUGCCGGUgaucgacaugcgCGAggUCCGCGCCUgcAGUGGg -3'
miRNA:   3'- -UGCGGUCA------------GCUa-GGGUGCGGG--UCACC- -5'
1409 3' -58.8 NC_001335.1 + 22548 0.71 0.281025
Target:  5'- aGCGaCGGUCuGGUCCUggucugggacGCGCCCGGUGa -3'
miRNA:   3'- -UGCgGUCAG-CUAGGG----------UGCGGGUCACc -5'
1409 3' -58.8 NC_001335.1 + 43363 0.72 0.224157
Target:  5'- cACGCCuccGUagagcaGAUCCCuCGCCCAG-GGg -3'
miRNA:   3'- -UGCGGu--CAg-----CUAGGGuGCGGGUCaCC- -5'
1409 3' -58.8 NC_001335.1 + 45050 1.1 0.000382
Target:  5'- aACGCCAGUCGAUCCCACGCCCAGUGGg -3'
miRNA:   3'- -UGCGGUCAGCUAGGGUGCGGGUCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.