miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14091 3' -53.5 NC_003521.1 + 202384 0.67 0.962231
Target:  5'- uUUCAUCGUCAcccGUgucacccgcgcccccGGUgaaaaGCCAGGCGCAa -3'
miRNA:   3'- -AAGUAGCAGUu--CG---------------UCA-----CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 197443 0.67 0.960827
Target:  5'- -cCAUgGcCAGGCGGcGCCAG-CGCAu -3'
miRNA:   3'- aaGUAgCaGUUCGUCaCGGUCuGCGU- -5'
14091 3' -53.5 NC_003521.1 + 195534 0.67 0.96047
Target:  5'- gUUCAUgaUGUUcaugcagAAGCacGGUGCCAGugGCAg -3'
miRNA:   3'- -AAGUA--GCAG-------UUCG--UCACGGUCugCGU- -5'
14091 3' -53.5 NC_003521.1 + 186648 0.68 0.957158
Target:  5'- gUCGaCGUCGcgcGGCGGUGgCGGAgGCGg -3'
miRNA:   3'- aAGUaGCAGU---UCGUCACgGUCUgCGU- -5'
14091 3' -53.5 NC_003521.1 + 225793 0.68 0.953261
Target:  5'- ---cUCGUCAG--GGUGCCAGGCGUc -3'
miRNA:   3'- aaguAGCAGUUcgUCACGGUCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 119070 0.68 0.952859
Target:  5'- aUCAUCcaccaGUCGGGCAagcagguGUGgCAGGCGCGc -3'
miRNA:   3'- aAGUAG-----CAGUUCGU-------CACgGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 50740 0.68 0.940167
Target:  5'- gUCGUCGgcgCAgcAGCGG-GCCAGaACGUAc -3'
miRNA:   3'- aAGUAGCa--GU--UCGUCaCGGUC-UGCGU- -5'
14091 3' -53.5 NC_003521.1 + 101494 0.69 0.930241
Target:  5'- ----gUGcUCGAGCAGcggcgGCCAGACGCGg -3'
miRNA:   3'- aaguaGC-AGUUCGUCa----CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 207309 0.69 0.924915
Target:  5'- cUCAUCaguGUCuauGAGUGcGUGCCGGACGCu -3'
miRNA:   3'- aAGUAG---CAG---UUCGU-CACGGUCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 109370 0.69 0.924915
Target:  5'- cUCGUCcagcggCAGGCAG-GCCAGGuCGCGg -3'
miRNA:   3'- aAGUAGca----GUUCGUCaCGGUCU-GCGU- -5'
14091 3' -53.5 NC_003521.1 + 14929 0.69 0.919346
Target:  5'- cUUCGagCG-CGAGCGGcagcGCCAGACGCGc -3'
miRNA:   3'- -AAGUa-GCaGUUCGUCa---CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 44155 0.7 0.901194
Target:  5'- -cCGUCGUCGAGCAGcaGCU-GGCGCc -3'
miRNA:   3'- aaGUAGCAGUUCGUCa-CGGuCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 34130 0.7 0.894668
Target:  5'- gUCGUCGaUGAGCAGgGCCAGgcccacGCGCAc -3'
miRNA:   3'- aAGUAGCaGUUCGUCaCGGUC------UGCGU- -5'
14091 3' -53.5 NC_003521.1 + 100169 0.7 0.894668
Target:  5'- --gGUCGUUggGgUAGggcGCCAGGCGCAg -3'
miRNA:   3'- aagUAGCAGuuC-GUCa--CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 68130 0.7 0.88791
Target:  5'- -aCGcCGUaCGAGCAGUGCugguauCAGGCGCAg -3'
miRNA:   3'- aaGUaGCA-GUUCGUCACG------GUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 192020 0.71 0.869277
Target:  5'- aUCGUCGUCAGGUucugcaccgccggcGUGCgcggCAGACGCGg -3'
miRNA:   3'- aAGUAGCAGUUCGu-------------CACG----GUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 52689 0.71 0.858634
Target:  5'- -gCAgCGUC-GGCGGUGCCAGcCGCu -3'
miRNA:   3'- aaGUaGCAGuUCGUCACGGUCuGCGu -5'
14091 3' -53.5 NC_003521.1 + 197239 0.71 0.826044
Target:  5'- gUCcUCGUCGccgcccgaggAGCGGUGCUuGACGCGg -3'
miRNA:   3'- aAGuAGCAGU----------UCGUCACGGuCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 226166 0.73 0.771974
Target:  5'- -gCGUCGuUCAGcgcGCAGaaggGCCAGACGCAc -3'
miRNA:   3'- aaGUAGC-AGUU---CGUCa---CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 142475 0.73 0.752841
Target:  5'- -cCGUCGUCAuGCGcUGUCAGACGCc -3'
miRNA:   3'- aaGUAGCAGUuCGUcACGGUCUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.