miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14091 5' -50.2 NC_003521.1 + 192981 0.66 0.998448
Target:  5'- gCCACGGCGGGCACGcUCGUCa----- -3'
miRNA:   3'- aGGUGUUGUUCGUGU-AGUAGaccgac -5'
14091 5' -50.2 NC_003521.1 + 177679 0.66 0.998139
Target:  5'- aUCguCAGCccGCGCAgcugcugcucCAUCUGGCUGa -3'
miRNA:   3'- -AGguGUUGuuCGUGUa---------GUAGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 32383 0.66 0.998139
Target:  5'- aUCUACGGCGGuaACAUgaccggCAUCUGGCa- -3'
miRNA:   3'- -AGGUGUUGUUcgUGUA------GUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 190292 0.66 0.998139
Target:  5'- aUCCACGugucuUggGCGCGUCAugUCcGGCg- -3'
miRNA:   3'- -AGGUGUu----GuuCGUGUAGU--AGaCCGac -5'
14091 5' -50.2 NC_003521.1 + 114530 0.66 0.998139
Target:  5'- gCCGCcACGGGCAcCAUCGauuuccgCUGGCg- -3'
miRNA:   3'- aGGUGuUGUUCGU-GUAGUa------GACCGac -5'
14091 5' -50.2 NC_003521.1 + 26949 0.66 0.998139
Target:  5'- cUCCGCGcccgGCGGGUACGUCAg-UGGUa- -3'
miRNA:   3'- -AGGUGU----UGUUCGUGUAGUagACCGac -5'
14091 5' -50.2 NC_003521.1 + 64527 0.67 0.997779
Target:  5'- aUCUAUAGCAuGCuauGCAUUAUCUuGGCUu -3'
miRNA:   3'- -AGGUGUUGUuCG---UGUAGUAGA-CCGAc -5'
14091 5' -50.2 NC_003521.1 + 39907 0.67 0.997779
Target:  5'- gUCC-CGGCGGGCGCGaaagCG-CUGGCUc -3'
miRNA:   3'- -AGGuGUUGUUCGUGUa---GUaGACCGAc -5'
14091 5' -50.2 NC_003521.1 + 154225 0.67 0.997779
Target:  5'- gCCACcACGAGCGCuUCuUCcccGGCUGc -3'
miRNA:   3'- aGGUGuUGUUCGUGuAGuAGa--CCGAC- -5'
14091 5' -50.2 NC_003521.1 + 22714 0.67 0.997364
Target:  5'- aUCUACAGCGGGCucuacgcccuCAUCGUCaccGGCg- -3'
miRNA:   3'- -AGGUGUUGUUCGu---------GUAGUAGa--CCGac -5'
14091 5' -50.2 NC_003521.1 + 143549 0.67 0.996885
Target:  5'- cCgGCGACGAGCAgcagccgcCAUCG-CUGGCg- -3'
miRNA:   3'- aGgUGUUGUUCGU--------GUAGUaGACCGac -5'
14091 5' -50.2 NC_003521.1 + 101965 0.67 0.996885
Target:  5'- aUCCACGcagaAGGUGCAgccCAUCUGGCc- -3'
miRNA:   3'- -AGGUGUug--UUCGUGUa--GUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 214940 0.67 0.996885
Target:  5'- -gUACAGCGGGCAgacCAUCGUCcugGGCg- -3'
miRNA:   3'- agGUGUUGUUCGU---GUAGUAGa--CCGac -5'
14091 5' -50.2 NC_003521.1 + 27225 0.67 0.996885
Target:  5'- aCCcCAACAGcCugGUCAUCgccGGCUGc -3'
miRNA:   3'- aGGuGUUGUUcGugUAGUAGa--CCGAC- -5'
14091 5' -50.2 NC_003521.1 + 212080 0.67 0.996336
Target:  5'- -gCGCGGCccGCGCG-CGUCUGGUUGu -3'
miRNA:   3'- agGUGUUGuuCGUGUaGUAGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 112382 0.67 0.996336
Target:  5'- gCCugGGCGAGCGCucgGUCAUcCUGGa-- -3'
miRNA:   3'- aGGugUUGUUCGUG---UAGUA-GACCgac -5'
14091 5' -50.2 NC_003521.1 + 121387 0.67 0.996336
Target:  5'- cUCCAUcGCGAGUACAUCGUgCaGGUg- -3'
miRNA:   3'- -AGGUGuUGUUCGUGUAGUA-GaCCGac -5'
14091 5' -50.2 NC_003521.1 + 176598 0.67 0.995711
Target:  5'- aCCugGAUGAGCACGUCcUC-GcGCUGc -3'
miRNA:   3'- aGGugUUGUUCGUGUAGuAGaC-CGAC- -5'
14091 5' -50.2 NC_003521.1 + 152372 0.67 0.995711
Target:  5'- gCCGgGGCGGcGCGCccucuacucuaGUCAUCUGGCg- -3'
miRNA:   3'- aGGUgUUGUU-CGUG-----------UAGUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 141289 0.67 0.995711
Target:  5'- cUCCGCGACAGGUGCAggugCgGGCg- -3'
miRNA:   3'- -AGGUGUUGUUCGUGUaguaGaCCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.