miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14092 3' -49.8 NC_003521.1 + 26272 0.67 0.998284
Target:  5'- -gCACCACCAGGcaccggucUCGAgGCCAggcCAGg -3'
miRNA:   3'- gaGUGGUGGUCCu-------AGUUaUGGUa--GUC- -5'
14092 3' -49.8 NC_003521.1 + 108978 0.67 0.998284
Target:  5'- gUCACCuCCAGGA-CcGUGCCGUUu- -3'
miRNA:   3'- gAGUGGuGGUCCUaGuUAUGGUAGuc -5'
14092 3' -49.8 NC_003521.1 + 109425 0.67 0.998284
Target:  5'- aUCAUgGCCAGGAUagaCAggGCCGUgGGc -3'
miRNA:   3'- gAGUGgUGGUCCUA---GUuaUGGUAgUC- -5'
14092 3' -49.8 NC_003521.1 + 201479 0.67 0.998253
Target:  5'- uCUCGCCuauacccACCAGGGccagcgauaaUCGAUugCGUCGc -3'
miRNA:   3'- -GAGUGG-------UGGUCCU----------AGUUAugGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 94970 0.67 0.998189
Target:  5'- -cCGCCGCCGGGccCAgagacgcguuaauaGUGCCGUCGu -3'
miRNA:   3'- gaGUGGUGGUCCuaGU--------------UAUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 77268 0.67 0.99795
Target:  5'- aCUCGCCGCCGGGc-----ACCAgCAGg -3'
miRNA:   3'- -GAGUGGUGGUCCuaguuaUGGUaGUC- -5'
14092 3' -49.8 NC_003521.1 + 218906 0.67 0.99795
Target:  5'- -cCGcCCGCCAGGGUCucgACUgcGUCAGc -3'
miRNA:   3'- gaGU-GGUGGUCCUAGuuaUGG--UAGUC- -5'
14092 3' -49.8 NC_003521.1 + 184407 0.67 0.99795
Target:  5'- gUCACCAaguaCAGGAUCAgcagcacgAUACCcacCAGa -3'
miRNA:   3'- gAGUGGUg---GUCCUAGU--------UAUGGua-GUC- -5'
14092 3' -49.8 NC_003521.1 + 126851 0.67 0.99795
Target:  5'- -gCACCGCCAGGAaCA--GCUcgCGGc -3'
miRNA:   3'- gaGUGGUGGUCCUaGUuaUGGuaGUC- -5'
14092 3' -49.8 NC_003521.1 + 220936 0.68 0.997564
Target:  5'- -aCAgCAgCAGGAUCAGcgccgacgcgGCCGUCAGc -3'
miRNA:   3'- gaGUgGUgGUCCUAGUUa---------UGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 52189 0.68 0.996608
Target:  5'- --uGCCGCCGGGGcggCGAgcUCAUCAGa -3'
miRNA:   3'- gagUGGUGGUCCUa--GUUauGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 163849 0.68 0.996608
Target:  5'- aUCGCCGCCAGcAUCAc-GCgCAUCGGc -3'
miRNA:   3'- gAGUGGUGGUCcUAGUuaUG-GUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 123589 0.68 0.996025
Target:  5'- -gCGgCGCCGGGAgccgcCGcgGCCGUCAGc -3'
miRNA:   3'- gaGUgGUGGUCCUa----GUuaUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 193799 0.68 0.996025
Target:  5'- -aCACaauGCCGGGcgUggUACCGUUAGa -3'
miRNA:   3'- gaGUGg--UGGUCCuaGuuAUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 89106 0.68 0.996025
Target:  5'- aUCAcCCGCCAGGA-CGAggACCAcgucuUCAGc -3'
miRNA:   3'- gAGU-GGUGGUCCUaGUUa-UGGU-----AGUC- -5'
14092 3' -49.8 NC_003521.1 + 44112 0.69 0.994613
Target:  5'- gUCGCCGCCGGuGAagUCG--GCCGUCGc -3'
miRNA:   3'- gAGUGGUGGUC-CU--AGUuaUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 56672 0.69 0.994613
Target:  5'- gCUCGCgCACCAGGucgCAGUAgCCGccCAGg -3'
miRNA:   3'- -GAGUG-GUGGUCCua-GUUAU-GGUa-GUC- -5'
14092 3' -49.8 NC_003521.1 + 72153 0.69 0.993767
Target:  5'- --uGCCACCAGGGaccucCGGcGCCGUCGGc -3'
miRNA:   3'- gagUGGUGGUCCUa----GUUaUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 77633 0.69 0.993767
Target:  5'- -gCGCCgGCCgagAGGAUCGAcguguuggaacUGCCGUCGGg -3'
miRNA:   3'- gaGUGG-UGG---UCCUAGUU-----------AUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 181214 0.69 0.993767
Target:  5'- gUCGCCGCCGGGGccgccgcCAcUACCGUCc- -3'
miRNA:   3'- gAGUGGUGGUCCUa------GUuAUGGUAGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.