Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14092 | 5' | -54.8 | NC_003521.1 | + | 178601 | 0.7 | 0.86115 |
Target: 5'- aGCCgaagaccUUGGCGUCGUCCgUGCGGauuUGCa -3' miRNA: 3'- gCGGa------AACCGUAGCAGG-GUGCU---ACGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 29071 | 0.66 | 0.979895 |
Target: 5'- gGCCUUccuggugGGCAUCGagCUCAUGGUgGCg -3' miRNA: 3'- gCGGAAa------CCGUAGCa-GGGUGCUA-CGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 30227 | 0.67 | 0.960332 |
Target: 5'- gGCCgUUGGCGUCGcgcugcaggUCCGCGcgGUUg -3' miRNA: 3'- gCGGaAACCGUAGCa--------GGGUGCuaCGA- -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 163128 | 0.67 | 0.956731 |
Target: 5'- cCGCCUccucgGGCAucugucugcccUCGUCCCugaGCGGUGgUg -3' miRNA: 3'- -GCGGAaa---CCGU-----------AGCAGGG---UGCUACgA- -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 57382 | 0.67 | 0.948874 |
Target: 5'- gCGCCag-GGCGUCGaUCUCGCGccacagcgccGUGCg -3' miRNA: 3'- -GCGGaaaCCGUAGC-AGGGUGC----------UACGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 224696 | 0.68 | 0.944611 |
Target: 5'- gCGCCcg-GGCGUguggaaguucaCGUCCCGCccguGGUGCUc -3' miRNA: 3'- -GCGGaaaCCGUA-----------GCAGGGUG----CUACGA- -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 39604 | 0.68 | 0.944611 |
Target: 5'- uGCCcugggUGGCggCGUCUCGCaAUGCUu -3' miRNA: 3'- gCGGaa---ACCGuaGCAGGGUGcUACGA- -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 62027 | 0.68 | 0.940123 |
Target: 5'- cCGCCg--GGCAUgccucgccCGUCCCGCGGacGCc -3' miRNA: 3'- -GCGGaaaCCGUA--------GCAGGGUGCUa-CGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 15754 | 0.68 | 0.935407 |
Target: 5'- gCGCCUggaaUGGUucugcaaaacGUCGUUCUACGcgGCg -3' miRNA: 3'- -GCGGAa---ACCG----------UAGCAGGGUGCuaCGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 223620 | 0.68 | 0.925285 |
Target: 5'- gGCCUccgucUGGUAggCGU-CCACGAUGCg -3' miRNA: 3'- gCGGAa----ACCGUa-GCAgGGUGCUACGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 235167 | 0.69 | 0.90718 |
Target: 5'- gCGCgaUUGGCGUCGcgucaugguggaaUCCCACGcccugugGUGCg -3' miRNA: 3'- -GCGgaAACCGUAGC-------------AGGGUGC-------UACGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 149253 | 0.71 | 0.829689 |
Target: 5'- aCGCCUacgacgUGGCcauGUCGUUCCGCGucgGCg -3' miRNA: 3'- -GCGGAa-----ACCG---UAGCAGGGUGCua-CGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 134208 | 1.07 | 0.00771 |
Target: 5'- uCGCCUUUGGCAUCGUCCCACGAUGCUc -3' miRNA: 3'- -GCGGAAACCGUAGCAGGGUGCUACGA- -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 233366 | 0.71 | 0.821374 |
Target: 5'- gGCUUUUcGCA-CGUCCCGCGugGUGCUg -3' miRNA: 3'- gCGGAAAcCGUaGCAGGGUGC--UACGA- -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 194752 | 0.7 | 0.868534 |
Target: 5'- aCGCCg--GGCGUCGcgaccucaUCCCGCccGGUGCc -3' miRNA: 3'- -GCGGaaaCCGUAGC--------AGGGUG--CUACGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 62649 | 0.68 | 0.935407 |
Target: 5'- cCGUCUcguaGGUAucugcguguUCGUCCUGCGGUGCUu -3' miRNA: 3'- -GCGGAaa--CCGU---------AGCAGGGUGCUACGA- -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 225091 | 0.68 | 0.940123 |
Target: 5'- gCGCCgaUGGCAcaUCGUa-CACGGUGUg -3' miRNA: 3'- -GCGGaaACCGU--AGCAggGUGCUACGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 23438 | 0.68 | 0.940123 |
Target: 5'- aGCC--UGGCggUG-CCCACGGUGUg -3' miRNA: 3'- gCGGaaACCGuaGCaGGGUGCUACGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 122652 | 0.67 | 0.963722 |
Target: 5'- uGCCggcgGGCGUCGUCUgcgGCGGUGg- -3' miRNA: 3'- gCGGaaa-CCGUAGCAGGg--UGCUACga -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 149963 | 0.67 | 0.963722 |
Target: 5'- gCGCUUcgcgUUGGCAcUGUgCCGCGcAUGCUc -3' miRNA: 3'- -GCGGA----AACCGUaGCAgGGUGC-UACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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