Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14092 | 5' | -54.8 | NC_003521.1 | + | 29071 | 0.66 | 0.979895 |
Target: 5'- gGCCUUccuggugGGCAUCGagCUCAUGGUgGCg -3' miRNA: 3'- gCGGAAa------CCGUAGCa-GGGUGCUA-CGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 151471 | 0.66 | 0.966903 |
Target: 5'- uGUCUggGGCAUgugCGUgCUugGGUGCg -3' miRNA: 3'- gCGGAaaCCGUA---GCAgGGugCUACGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 159994 | 0.66 | 0.969882 |
Target: 5'- uCGCC---GGCAacUCGUCCUACGA-GUa -3' miRNA: 3'- -GCGGaaaCCGU--AGCAGGGUGCUaCGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 112691 | 0.66 | 0.972665 |
Target: 5'- uCGCCgagcgcgGGCcgcccUCGgacCCCAUGAUGCa -3' miRNA: 3'- -GCGGaaa----CCGu----AGCa--GGGUGCUACGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 87096 | 0.66 | 0.975256 |
Target: 5'- gGCCacggugGGCAUCGUgCCGCuGGUGg- -3' miRNA: 3'- gCGGaaa---CCGUAGCAgGGUG-CUACga -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 104884 | 0.66 | 0.975256 |
Target: 5'- gCGCCcgaGGCGUCGcacaUCCCGCGGccgugGCc -3' miRNA: 3'- -GCGGaaaCCGUAGC----AGGGUGCUa----CGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 123296 | 0.66 | 0.975256 |
Target: 5'- cCGCCa--GGuCGUCGUagCCCACGGagUGCa -3' miRNA: 3'- -GCGGaaaCC-GUAGCA--GGGUGCU--ACGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 124054 | 0.66 | 0.977664 |
Target: 5'- uGCCgc-GGCggCGgCCCACGcUGCa -3' miRNA: 3'- gCGGaaaCCGuaGCaGGGUGCuACGa -5' |
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14092 | 5' | -54.8 | NC_003521.1 | + | 28052 | 0.66 | 0.979895 |
Target: 5'- gCGCCUcuacGGCAUCGUCaccuuCAUGA-GCa -3' miRNA: 3'- -GCGGAaa--CCGUAGCAGg----GUGCUaCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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