miRNA display CGI


Results 21 - 29 of 29 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14092 5' -54.8 NC_003521.1 + 29071 0.66 0.979895
Target:  5'- gGCCUUccuggugGGCAUCGagCUCAUGGUgGCg -3'
miRNA:   3'- gCGGAAa------CCGUAGCa-GGGUGCUA-CGa -5'
14092 5' -54.8 NC_003521.1 + 151471 0.66 0.966903
Target:  5'- uGUCUggGGCAUgugCGUgCUugGGUGCg -3'
miRNA:   3'- gCGGAaaCCGUA---GCAgGGugCUACGa -5'
14092 5' -54.8 NC_003521.1 + 159994 0.66 0.969882
Target:  5'- uCGCC---GGCAacUCGUCCUACGA-GUa -3'
miRNA:   3'- -GCGGaaaCCGU--AGCAGGGUGCUaCGa -5'
14092 5' -54.8 NC_003521.1 + 112691 0.66 0.972665
Target:  5'- uCGCCgagcgcgGGCcgcccUCGgacCCCAUGAUGCa -3'
miRNA:   3'- -GCGGaaa----CCGu----AGCa--GGGUGCUACGa -5'
14092 5' -54.8 NC_003521.1 + 87096 0.66 0.975256
Target:  5'- gGCCacggugGGCAUCGUgCCGCuGGUGg- -3'
miRNA:   3'- gCGGaaa---CCGUAGCAgGGUG-CUACga -5'
14092 5' -54.8 NC_003521.1 + 104884 0.66 0.975256
Target:  5'- gCGCCcgaGGCGUCGcacaUCCCGCGGccgugGCc -3'
miRNA:   3'- -GCGGaaaCCGUAGC----AGGGUGCUa----CGa -5'
14092 5' -54.8 NC_003521.1 + 123296 0.66 0.975256
Target:  5'- cCGCCa--GGuCGUCGUagCCCACGGagUGCa -3'
miRNA:   3'- -GCGGaaaCC-GUAGCA--GGGUGCU--ACGa -5'
14092 5' -54.8 NC_003521.1 + 124054 0.66 0.977664
Target:  5'- uGCCgc-GGCggCGgCCCACGcUGCa -3'
miRNA:   3'- gCGGaaaCCGuaGCaGGGUGCuACGa -5'
14092 5' -54.8 NC_003521.1 + 28052 0.66 0.979895
Target:  5'- gCGCCUcuacGGCAUCGUCaccuuCAUGA-GCa -3'
miRNA:   3'- -GCGGAaa--CCGUAGCAGg----GUGCUaCGa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.