miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 3' -57.1 NC_003521.1 + 46737 0.66 0.919965
Target:  5'- uCGUgCCCCA---GGGCCcc-CAGCAGCu -3'
miRNA:   3'- -GUA-GGGGUucaCCCGGuacGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 74162 0.66 0.919965
Target:  5'- ---gCCCAGGUGccgcuGGCCGacUGCGccGCGGCg -3'
miRNA:   3'- guagGGGUUCAC-----CCGGU--ACGU--CGUCG- -5'
14094 3' -57.1 NC_003521.1 + 192945 0.66 0.914358
Target:  5'- --gCCCUggGacacUGGGCCAUGau-CAGCa -3'
miRNA:   3'- guaGGGGuuC----ACCCGGUACgucGUCG- -5'
14094 3' -57.1 NC_003521.1 + 204013 0.66 0.914358
Target:  5'- uCAUgCCCGAGUccGCCGUccGCgAGCGGCu -3'
miRNA:   3'- -GUAgGGGUUCAccCGGUA--CG-UCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 145856 0.66 0.914358
Target:  5'- gCGUCUC----UGGGCCcgGCGGCGGg -3'
miRNA:   3'- -GUAGGGguucACCCGGuaCGUCGUCg -5'
14094 3' -57.1 NC_003521.1 + 14422 0.66 0.914358
Target:  5'- gAUCgCCUAucgugacguGGUGcacacGGCCcUGCGGCGGCg -3'
miRNA:   3'- gUAG-GGGU---------UCAC-----CCGGuACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 166078 0.66 0.914358
Target:  5'- -cUCCCgCA---GGGCCAUaGCGGgAGCg -3'
miRNA:   3'- guAGGG-GUucaCCCGGUA-CGUCgUCG- -5'
14094 3' -57.1 NC_003521.1 + 221297 0.66 0.914358
Target:  5'- gAUCCUCGGGUccgaGGGCCA-GUAGUcccGCg -3'
miRNA:   3'- gUAGGGGUUCA----CCCGGUaCGUCGu--CG- -5'
14094 3' -57.1 NC_003521.1 + 112483 0.66 0.912631
Target:  5'- -uUCCCC--GUGGGCC-UGUAccugcccgaggaccGCGGCu -3'
miRNA:   3'- guAGGGGuuCACCCGGuACGU--------------CGUCG- -5'
14094 3' -57.1 NC_003521.1 + 211686 0.66 0.908524
Target:  5'- gGUCUgCAGcUGGuGCUggAUGUAGCAGCg -3'
miRNA:   3'- gUAGGgGUUcACC-CGG--UACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 28453 0.66 0.908524
Target:  5'- uCGUCgCCAuccAGccuUGGGCgGUGCAcCAGCg -3'
miRNA:   3'- -GUAGgGGU---UC---ACCCGgUACGUcGUCG- -5'
14094 3' -57.1 NC_003521.1 + 126139 0.66 0.902465
Target:  5'- ---aCCCAcGUaGGGCCAgGCGGCGucGCg -3'
miRNA:   3'- guagGGGUuCA-CCCGGUaCGUCGU--CG- -5'
14094 3' -57.1 NC_003521.1 + 153185 0.66 0.902465
Target:  5'- --cCUCCAGccuGUGcgaGGCC-UGCGGCGGCa -3'
miRNA:   3'- guaGGGGUU---CAC---CCGGuACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 162850 0.66 0.902465
Target:  5'- gAUCCCCGugaAGUucGuGGCCAacgcGCAGgGGCg -3'
miRNA:   3'- gUAGGGGU---UCA--C-CCGGUa---CGUCgUCG- -5'
14094 3' -57.1 NC_003521.1 + 124430 0.66 0.901847
Target:  5'- -cUCCUCGuccggcgagacguGGuUGGGCC--GCGGCGGCa -3'
miRNA:   3'- guAGGGGU-------------UC-ACCCGGuaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 223349 0.67 0.896183
Target:  5'- --gCCCCAGGccucggcgGcGGCCuugGuCAGCAGCg -3'
miRNA:   3'- guaGGGGUUCa-------C-CCGGua-C-GUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 30883 0.67 0.896183
Target:  5'- -uUCCgcguCCGAGaGGGCCGagcugaacUGCGGCAGg -3'
miRNA:   3'- guAGG----GGUUCaCCCGGU--------ACGUCGUCg -5'
14094 3' -57.1 NC_003521.1 + 127830 0.67 0.896183
Target:  5'- gGUgCCCGGGUGGuaguggcgcccGCCGcugagcggcaUGUAGUAGCg -3'
miRNA:   3'- gUAgGGGUUCACC-----------CGGU----------ACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 171778 0.67 0.896183
Target:  5'- cCAUCCgguGGUggGGGCCAUGCu-CAGCa -3'
miRNA:   3'- -GUAGGgguUCA--CCCGGUACGucGUCG- -5'
14094 3' -57.1 NC_003521.1 + 111477 0.67 0.896183
Target:  5'- aCcgCCUgGAGUGGGucuacuuccugaCCAgcgggcugGCGGCGGCg -3'
miRNA:   3'- -GuaGGGgUUCACCC------------GGUa-------CGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.